Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g2273 ATGGAGAAAGGAGCAACTAAGAAGAAAACATCGCCCCTCTCTTTGCAGCAGTTCATCACTATTACCACCCCTCTTCTTGACTTGGAAAAGGAAGCTGAGATATCAACCTCAATAGCCACAGGATCATCCCGGAATTTGGATACTGCTCAGAAGAGGGGCTCCACAATCCTCAACTTGAAGTGTGTGGATGTCCAGACAGGGCTTATGGGAAAATCCCTGATCGAATTCCAGTCTACAAAAGGAGATGTTCTTCCTGCACACAAGTTTAGTACTCATGATGTTGTTGTTTTAAAACTCAACAAGGCTGATTTAGGTTCTCCTGCTCTTGGACAAGGTGTAGTTTATAGATTAAAGGACTCATCAATAACTGTTGCTTTTGATGATATACCAGAAGATGGTTTAAACAGTCCCCTAAGGCTTGAAAAAGTGGCAAATGAGGTGACGTATCGCAGGATGAAAGATGCATTAATACAGTTGAGTAAAGGAGTGCATAAGGGTCCAGCTGCTGATCTGATTCCTGTCTTGTTTGGGGAGAGGCCACCAACAGTGTCCAAGAAGGATGTATCCTTCTCTCCTGTTAATACTAACCTTGATCACTCTCAGAAAGGTGCAATTTCAAAAGCCCTATCATCGAAGAATGTGTTTTTGCTGCATGGACCTCCTGGAACGGGAAAAACTACAACAGTGGTGGAAATTATATTACAAGAAGTGAAACGTGGATCAAAGATTCTTGCTTGTGCTGCCTCAAATATTGCTGTTGATAACATTGTTGAGCGGCTAGTTCCACATAGGGTTAAGCTGGTGAGAATAGGTCATCCTGCACGTTTATTGCCTCAAGTACTGGACAGTGCACTGGATGCTCAGGTACTACGAGGAGATAACAGTGGCCTTGCAAATGACATTCGGAAAGAAATGAAGGCATTGAATGGAAAGCTGTTGAAAACTAAAGACAAAAGTACAAGGAGGGACATACAGAAGGAACTTAGGACTCTATCCAAAGAAGAGCGTAAAAGGCAGCAGCTTGCTGTAACAGATGTAATTAAAAGTGCAGATGTAGTATTAACTACTTTGACTGGGGCTTTTTCTAAGAAACTAGACAGCACTTCATTTGATTTGGTGATTATTGATGAAGCTGCTCAAGCACTTGAGATAGCCTGCTGGATACCTCTGCTGAAGGGCTCAAGATGTATCCTTGCAGGGGACCATCTTCAACTTCCTCCAACCATTCAAAGTGTTGAAGCTGAGAAGAAAGGCTTAGGAAGAACCCTCTTTGAACGACTTGCAGAAATGTATGGCGATGAAGTCACATCTATGCTTACTGTCCAGTACCGCATGCATGAACTTATCATGGATTGGTCTTCTAAAGAACTATACAACAGCAAGATTAAGGCCCATGCTAGTGTTGCTGCACATATGCTCTATAATCTTGAGGATGCGAAGAGGGCACCTTCAACTGAACCAACACTTCTTCTCATAGATATAGCTGGATGCGATATGGAAGAAAAGAAAGATGAAGAAGATAGCACCCTTAATGAAGGTGAAGCTGAAGTTGCTATGGCTCATGCAAAGAGACTAGTGCAAAGTGGTGTGCTTCCTTCTGATATTGGAATTATTACCCCATATGCTGCCCAGGTTGTTTTACTCAAGATGTTGAGAAACAATGAGTACCGGCTGAAGGATGTTGAGATCTCAACAGTTGATGGCTTTCAGGGAAGGGAAAAGGAAGCCATCATTATATCAATGGTCCGATCCAACTCAAAAAAAGAGGTGGGCTTTCTGAGTGATCGCCGGCGGATGAATGTGGCTGTGACACGGGCAAGAAGGCAATGCTGTCTTGTCTGTGACACTGAGACAGTCAGCAGTGATGGATTTTTGAAGCGATTGATAGAGTATTTTGAAGAGCATGGCGAGTATCTGAGTGCTTCTGAATACCAGAATGAATAG 1944 0.429 MEKGATKKKTSPLSLQQFITITTPLLDLEKEAEISTSIATGSSRNLDTAQKRGSTILNLKCVDVQTGLMGKSLIEFQSTKGDVLPAHKFSTHDVVVLKLNKADLGSPALGQGVVYRLKDSSITVAFDDIPEDGLNSPLRLEKVANEVTYRRMKDALIQLSKGVHKGPAADLIPVLFGERPPTVSKKDVSFSPVNTNLDHSQKGAISKALSSKNVFLLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLVPHRVKLVRIGHPARLLPQVLDSALDAQVLRGDNSGLANDIRKEMKALNGKLLKTKDKSTRRDIQKELRTLSKEERKRQQLAVTDVIKSADVVLTTLTGAFSKKLDSTSFDLVIIDEAAQALEIACWIPLLKGSRCILAGDHLQLPPTIQSVEAEKKGLGRTLFERLAEMYGDEVTSMLTVQYRMHELIMDWSSKELYNSKIKAHASVAAHMLYNLEDAKRAPSTEPTLLLIDIAGCDMEEKKDEEDSTLNEGEAEVAMAHAKRLVQSGVLPSDIGIITPYAAQVVLLKMLRNNEYRLKDVEISTVDGFQGREKEAIIISMVRSNSKKEVGFLSDRRRMNVAVTRARRQCCLVCDTETVSSDGFLKRLIEYFEEHGEYLSASEYQNE* 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g2273 647 PANTHER DNA2/NAM7 HELICASE FAMILY MEMBER 9 645 - -
Dod01g2273 647 SMART AAA_5 211 463 IPR003593 -
Dod01g2273 647 CDD DEXXQc_SMUBP2 196 444 - -
Dod01g2273 647 CDD SF1_C_Upf1 445 633 IPR041679 -
Dod01g2273 647 Pfam AAA domain 420 616 IPR041679 -
Dod01g2273 647 SMART ultradead3 193 444 IPR014001 -
Dod01g2273 647 Gene3D - 23 427 IPR027417 -
Dod01g2273 647 Gene3D - 443 647 IPR027417 -
Dod01g2273 647 Coils Coil 298 318 - -
Dod01g2273 647 Pfam AAA domain 197 411 IPR041677 GO:0004386
Dod01g2273 647 Gene3D - 41 143 - -
Dod01g2273 647 PANTHER HELICASE WITH ZINC FINGER 2 9 645 - -
Dod01g2273 647 TIGRFAM TIGR00376: putative DNA helicase 345 640 IPR004483 GO:0003677|GO:0005524
Dod01g2273 647 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 192 633 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g2273 Dod-Chr1 60557699 60569116 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g2273 170 380 Core DNA Replication Machinery Family AT1G08840 27.962 1.35e-10 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g2273 K19036 - gmx:100810545 1156.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g2273 01 60557699 60569116 Dod01g2273 01 60557699 60569116 ECH