Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g2272 ATGGACACTTGCAGAAAGTCCCCCTTGAAGCCATGGAAGAAGGGGCCGACCAGAGGGAAAGGTGGCCCCCAGAACGCCTCATGTGAGTATCGAGGCGTTCGGCAGAGAACATGGGGCAAATGGGTCGCCGAGATCAGAGAGCCAAAGAAGAGAACCAGGCTCTGGCTGGGTTCTTTTGCCACAGCTGAAGAAGCTGCCATGGCTTATGATGAGGCTGCAAGGAGACTCTATGGATCCGATGCATACCTTAACCTTCCCCACTTGAAACCAAGCTCCAATTCAACAATCAAATCTGGAAAGTTCAAATGGTTGCCTTCCAAGAACTTCATTTCAATGTTTCCTTCTTGTGGACTACTCAATGTTAATGCACAACCTAGTGTTGACTTAATCCATCAGCGGCTACAACAGTTTAAGCAAAATGGGGTTGTTGCAAGTCAATGCCCTTCTGCCTCATCCAATGATCCAAAGGCAGAAGAAATTCAGAATGTGGACAGCAAAGTTCATGCAGAAACTCCTCCAAAGGAGAAAAATCCTCAAACATCATCATCAGAGGAGGTGCTCGGAGATCTTCATGAGAAGCCACAGATAGACCTCCACGAGTTTCTTCAACAAATGGGAATACTGAAAGGAGAAAGAGAGGAAGAGAGAACTGATAGCTCAGGAAGTTCAACAGTGCCTGAAGCTGTGTTGAGCGATAACTACGATCAACTGGGAGTGTTTTGTGACAACAGTGTTAACTGGGAGGCATTGATTGAGATGCATGGAATCGCAGATGTTCAGGAAACAGAAGCCTCCCAGTTGGTAGCATATGACACAAGTGATGAGCTCAATTTCTCCACTTCCATTTGGAACTTCTAA 858 0.4639 MDTCRKSPLKPWKKGPTRGKGGPQNASCEYRGVRQRTWGKWVAEIREPKKRTRLWLGSFATAEEAAMAYDEAARRLYGSDAYLNLPHLKPSSNSTIKSGKFKWLPSKNFISMFPSCGLLNVNAQPSVDLIHQRLQQFKQNGVVASQCPSASSNDPKAEEIQNVDSKVHAETPPKEKNPQTSSSEEVLGDLHEKPQIDLHEFLQQMGILKGEREEERTDSSGSSTVPEAVLSDNYDQLGVFCDNSVNWEALIEMHGIADVQETEASQLVAYDTSDELNFSTSIWNF* 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g2272 285 Pfam AP2 domain 28 78 IPR001471 GO:0003700|GO:0006355
Dod01g2272 285 MobiDBLite consensus disorder prediction 164 186 - -
Dod01g2272 285 ProSiteProfiles AP2/ERF domain profile. 29 86 IPR001471 GO:0003700|GO:0006355
Dod01g2272 285 Gene3D AP2/ERF domain 29 87 IPR036955 GO:0003700|GO:0006355
Dod01g2272 285 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2F 1 282 - -
Dod01g2272 285 PRINTS Ethylene responsive element binding protein signature 30 41 IPR001471 GO:0003700|GO:0006355
Dod01g2272 285 PRINTS Ethylene responsive element binding protein signature 52 68 IPR001471 GO:0003700|GO:0006355
Dod01g2272 285 SMART rav1_2 29 92 IPR001471 GO:0003700|GO:0006355
Dod01g2272 285 CDD AP2 28 88 IPR001471 GO:0003700|GO:0006355
Dod01g2272 285 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 1 282 - -
Dod01g2272 285 MobiDBLite consensus disorder prediction 1 28 - -
Dod01g2272 285 SUPERFAMILY DNA-binding domain 29 87 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g2272 Dod-Chr1 60556386 60557553 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g2272 5 285 AP2-EREBP Transcription Factor Family AT3G57600 49.823 1.19e-87 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dod01g2272 AP2 3.3e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g2272 - - gmx:100801311 456.062
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g2272 01 60556386 60557553 Dod01g2272 01 60556386 60557553 ECH