Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g2267 ATGAATAACTTGACTGTTGAAACTGAAGATTCTTTTGCTAGCTTGCTTGAGCTAGCGGCCAATAATGATGTTGAAGGTTTTAAACGATTGATTGAGTATGATCGTTCCTCAGTGGATGAGGTTGGGCTGTGGTATGGTCGTCGGAAGGGATCAAAGCAGATGGTCAATGAGCAAAGAACACCTTTGATGGTTGCTGCTACTTATGGTAGCATTGATATTATGAAGCTGATTCTCTCACTGTCTGAAGCTGACATTAACCGGCCTTGTGGCCTTGACAAGAGCACTGCCCTTCATTGTGCAGCGTCCGGTGGGTCTGAAAATGCTGTGGATGCTGTGAAACTGCTTCTGGCTGCTGGGGCTGATCCAAATTCTGTTGATGCTAATGGTCATCGTCCGGTAGATGTTATTGTTTCTCCTCCCAAGCTGGAGCAAGTCAAAAACTGTCTTGAAGAACTTCTTCAAACTGTTGCTTCTATTGCTGGGTGTAATCTGAGGGTGATCACTACCTCATTTAATACATACTCTCCACCTTCATCAACTTCACCGGAGAATGGGTCCCCTTCTGCACCAGATTTCCAATTGAAGGTAAAGTCAAGTGATGCCCCTTTATCTTCTGCATCTGAGAAGAAAGAATATCCTGTTGATCCATCCCTTCCAGACATTAAGAACAGCATATATTCAACCGACGAGTTCCGAATGTACTCTTTCAAGGTTCGTCCTTGTTCACGTGCTTATTCACATGATTGGACTGAATGCCCTTTCGTGCATCCAGGAGAGAATGCTCGAAGAAGGGACCCAAGAAAGTACCATTATAGCTGTGTCCCTTGTCCTGATTTTCGGAAGGGTGCTTGCCGGCGGGGAGATATGTGTGAATATGCTCATGGGGTCTTTGAGTGCTGGCTGCATCCAGCACAATATCGAACCCGTCTCTGCAAGGACGGGACAAATTGCTCCAGAAGAGTTTGCTTCTTTGCCCACACTGCTGAAGAGCTTCGGCCATTATATGTTTCGACTGGTTCTGCTGTTCCCTCACCTCGCTCAAGCACGTCTTCTGCCATGGATTTTGCTGCTGCAATGAGCATTTTGCCTGGTTCTCCATCCTCTATGTCTGTCATGTCTCCTTCACCATTCACTCCACCCATGTCACCATCAGCCAATGGCATTTCACACTCCTCTGTTGCTTGGCCCCAGCCAAATGTCCCAGCCTTGCATCTTCCAGGAAGCAATCTTCAATCCAGTCGATTGAGAGCTTCACTCAACGCTAGAGATATTCCTGTGGATGACTTTGACTTGCTTCCTGATTATGATCAGCAGCAGCAGCAGCTCATTAATGAGTTATCTTGCCTCTCTCCACAGCCTATGAATTCTAATCCTCTAAATCGCTCTGGTCGGGTGAAGCCCCTGACTCCTTCAAATCTTGATGATCTGTTCTCTGCTGAGAGTTCTTCTCCTCGATATGCTGATCCAGCACTGACTTCCACGGTTTTTTCGCCGACTCACAAATCAGCCGTCTTTAATCAATTTCAGCAGCAGCAAAGCATGTTATCACCTGTGAATACAAATTTTTCTTCTAAAAATGTTGACCATCATTTATTTCAGGCCTCTTTTGGGGTTCAGTCGTCAGGAAGGATGTCTCCGCGTAATGTGGAGCCTATTTCTCCAATGAGCTCTAGGATTTCTATGCTAGCTCAACGTGAGAAGCAGCAACAATTTCGCAGCCTTAGCTCCCGGGAACTTGGCTCCAACTCTGCTGCTGCAGCTGCTGCCTCAGTCAACTCTTGGTCAAAATGGGGATCCCCCAATGGTAAGTTGGATTGGGCAGTAGGTGCAGATGAATTAGGAGGAGGTAAGCTCCGTAGATCATCTTCATTTGAGCTTGGGAACAACGGTGAGGAGCCTGATTTATCATGGGTGCAGTCACTCGTTAAAGAATCTCCAACTGAGATTAAAGAGAAGCTGGCAACTAATGTCTCAAGTGCTGCAGCAGCTGGATCCTCCACTGAGGGATCAAATATGAGCGCACAAATGGAATCTGTTGATCATGCTGTATTGGGAGCATGGCTTGAGCAGATGCAGCTTGATCATCTTGTGGCTCAGCAAAATTGA 2106 0.4649 MNNLTVETEDSFASLLELAANNDVEGFKRLIEYDRSSVDEVGLWYGRRKGSKQMVNEQRTPLMVAATYGSIDIMKLILSLSEADINRPCGLDKSTALHCAASGGSENAVDAVKLLLAAGADPNSVDANGHRPVDVIVSPPKLEQVKNCLEELLQTVASIAGCNLRVITTSFNTYSPPSSTSPENGSPSAPDFQLKVKSSDAPLSSASEKKEYPVDPSLPDIKNSIYSTDEFRMYSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTNCSRRVCFFAHTAEELRPLYVSTGSAVPSPRSSTSSAMDFAAAMSILPGSPSSMSVMSPSPFTPPMSPSANGISHSSVAWPQPNVPALHLPGSNLQSSRLRASLNARDIPVDDFDLLPDYDQQQQQLINELSCLSPQPMNSNPLNRSGRVKPLTPSNLDDLFSAESSSPRYADPALTSTVFSPTHKSAVFNQFQQQQSMLSPVNTNFSSKNVDHHLFQASFGVQSSGRMSPRNVEPISPMSSRISMLAQREKQQQFRSLSSRELGSNSAAAAAASVNSWSKWGSPNGKLDWAVGADELGGGKLRRSSSFELGNNGEEPDLSWVQSLVKESPTEIKEKLATNVSSAAAAGSSTEGSNMSAQMESVDHAVLGAWLEQMQLDHLVAQQN* 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g2267 701 PANTHER ARM REPEAT CCCH-TYPE ZINC FINGER PROTEIN 1 698 - -
Dod01g2267 701 MobiDBLite consensus disorder prediction 449 467 - -
Dod01g2267 701 SMART ANK_2a 10 40 IPR002110 GO:0005515
Dod01g2267 701 SMART ANK_2a 92 124 IPR002110 GO:0005515
Dod01g2267 701 SMART ANK_2a 57 87 IPR002110 GO:0005515
Dod01g2267 701 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 275 295 IPR000571 GO:0046872
Dod01g2267 701 SMART c3hfinal6 270 296 IPR000571 GO:0046872
Dod01g2267 701 SMART c3hfinal6 305 328 IPR000571 GO:0046872
Dod01g2267 701 PANTHER UNKEMPT FAMILY MEMBER 1 698 IPR045234 -
Dod01g2267 701 SUPERFAMILY Ankyrin repeat 5 146 IPR036770 -
Dod01g2267 701 ProSiteProfiles Zinc finger C3H1-type profile. 275 297 IPR000571 GO:0046872
Dod01g2267 701 Gene3D - 8 155 IPR036770 -
Dod01g2267 701 ProSiteProfiles Ankyrin repeat region circular profile. 92 126 - -
Dod01g2267 701 ProSiteProfiles Ankyrin repeat profile. 92 127 IPR002110 GO:0005515
Dod01g2267 701 MobiDBLite consensus disorder prediction 449 468 - -
Dod01g2267 701 MobiDBLite consensus disorder prediction 174 205 - -
Dod01g2267 701 MobiDBLite consensus disorder prediction 174 215 - -
Dod01g2267 701 Pfam Ankyrin repeats (3 copies) 18 126 IPR002110 GO:0005515
Dod01g2267 701 Gene3D - 271 333 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g2267 Dod-Chr1 60494412 60497598 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g2267 3 694 C2H2 Transcription Factor Family AT5G12850 53.015 0.0 686
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Dod01g2267 Ank_2 1.1e-10 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g2267 - - ccaj:109796653 1201.42
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g2267 01 60494412 60497598 Dod01g2267 01 60494412 60497598 ECH