Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g2262 ATGGGTAACTGCTGCGCGGCACCTTCAGCTACCAACGAAGGTGGGACCCCGAAGGCCCAGAAGAAAGGTAAGAAGAAGGAGAACCCTTTCGCCGTCGACTACGGCAACGGTGTAGGAAACGACGCCGTTCGAGGAAAACTCATCGTTTTGAAGGACCCAACGGGCCGCGAGATCTCGCAGCGTTACGAGCTGGGGCGCGAGCTGGGTCGCGGGGAATTCGGCGTGACGTACCTTTGCACTGACAAGGAGACGCGCGATGAGTACGCGTGCAAGTCAATCTCGAAGAAGAAGCTGAGGACTGCCATAGACATAGAGGATGTTAGGAGGGAGGTTGAGATCATGAGGCATTTGCCGAAGCACCCGAATATTGTGTCTTTGAAGGATACTTATGAGGATGATAGCGCGGTGCATCTTGTTATGGAGTTGTGTGAGGGTGGTGAGCTCTTTGATAGGATTGTTGCGAGGGGCCATTACACGGAGCGTGCTGCTGCTGCGGTTACTAAGACCATCGTTGAAGTCGTGCAGATGTGCCACAAACATGGTGTGATGCATCGGGATCTCAAACCTGAGAACTTCCTGTTTGCAAATAAGAAGGAAACAGCAGCTCTGAAGGCCATTGATTTTGGATTGTCGGTGTTCTTTAAACCAGGGGAAAGATTTAATGAGATTGTTGGAAGTCCATATTACATGGCTCCAGAGGTATTAAAGCGATATTATGGCCCAGAAATAGATATATGGAGTGCTGGAGTAATTCTATACATCTTACTTTGCGGTGTCCCACCGTTTTGGGCAGAAACTGAACAAGGAGTTGCACAAGCAATTATACGATCTCATGTTGATTTTAAAAGGGATCCATGGCCAAAAGTTTCTGATAATGCAAAAGACCTTGTGAAGAAGATGCTTGATCCTGACCCGAGGCGGCGGCTTACTGCACAGGAAGTGTTAGATCACCCGTGGATACAAAATGCAAAGAAAGCTCCTAATGTTTCATTAGGAGAAACAGTTAGAGCAAGACTCAAGCAATTTAGTGTGATGAACAAGCTTAAGAAAAGAGCTTTGAGGGTGATTGCAGAGCACCTGTCAGTAGAAGAAGCTGCTGGAATAAAAGAAGGATTCCAAGTTATGGATACGACCAACAGAGGCAAGATTAACATTGATGAACTACGAGTAGGGTTGCTAAAGCTAGGTCATCAAGTTCCTGAGTCAGATCTCCAAATTCTTATGGAAGCTGGTGATGTGGATAAGGATGGGTACCTAGATTATGGAGAGTTTGTAGCCATTTCTGTTCATCTGAGGAAGATGGGAAATGATGAGCACCTTCGCAAAGCCTTCCAGTTTTTTGATGTGGACCAAAGTGGGTATATTGAACTTGAGGAGTTGCGCAGCGCCTTGTCTGATGAAGTTGACACAAACAGTGAAGAAGTCATCAATGCAATTATGCATGATGTGGACACAGATAAGGATGGAAGAATAAGTTATGAGGAATTCGCCACAATGATGAAGGCTGGCACAGATTGGAGAAAAGCATCTAGGCAGTATTCACGAGAGAGATTTACTAGTCTCAGCCTCAAGTTGATGAAGGACGGCTCATTGTCATTAAACAATGAGGCTAGATGA 1617 0.4613 MGNCCAAPSATNEGGTPKAQKKGKKKENPFAVDYGNGVGNDAVRGKLIVLKDPTGREISQRYELGRELGRGEFGVTYLCTDKETRDEYACKSISKKKLRTAIDIEDVRREVEIMRHLPKHPNIVSLKDTYEDDSAVHLVMELCEGGELFDRIVARGHYTERAAAAVTKTIVEVVQMCHKHGVMHRDLKPENFLFANKKETAALKAIDFGLSVFFKPGERFNEIVGSPYYMAPEVLKRYYGPEIDIWSAGVILYILLCGVPPFWAETEQGVAQAIIRSHVDFKRDPWPKVSDNAKDLVKKMLDPDPRRRLTAQEVLDHPWIQNAKKAPNVSLGETVRARLKQFSVMNKLKKRALRVIAEHLSVEEAAGIKEGFQVMDTTNRGKINIDELRVGLLKLGHQVPESDLQILMEAGDVDKDGYLDYGEFVAISVHLRKMGNDEHLRKAFQFFDVDQSGYIELEELRSALSDEVDTNSEEVINAIMHDVDTDKDGRISYEEFATMMKAGTDWRKASRQYSRERFTSLSLKLMKDGSLSLNNEAR* 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g2262 538 ProSitePatterns EF-hand calcium-binding domain. 484 496 IPR018247 -
Dod01g2262 538 Pfam EF-hand domain pair 381 429 IPR002048 GO:0005509
Dod01g2262 538 Gene3D Transferase(Phosphotransferase) domain 1 148 328 - -
Dod01g2262 538 SMART serkin_6 62 320 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dod01g2262 538 CDD STKc_CAMK 61 319 - -
Dod01g2262 538 ProSiteProfiles EF-hand calcium-binding domain profile. 471 506 IPR002048 GO:0005509
Dod01g2262 538 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 32-LIKE 16 517 - -
Dod01g2262 538 Gene3D - 329 503 - -
Dod01g2262 538 ProSitePatterns Serine/Threonine protein kinases active-site signature. 182 194 IPR008271 GO:0004672|GO:0006468
Dod01g2262 538 ProSiteProfiles EF-hand calcium-binding domain profile. 435 470 IPR002048 GO:0005509
Dod01g2262 538 SMART efh_1 367 395 IPR002048 GO:0005509
Dod01g2262 538 SMART efh_1 439 467 IPR002048 GO:0005509
Dod01g2262 538 SMART efh_1 403 431 IPR002048 GO:0005509
Dod01g2262 538 SMART efh_1 475 503 IPR002048 GO:0005509
Dod01g2262 538 ProSitePatterns EF-hand calcium-binding domain. 412 424 IPR018247 -
Dod01g2262 538 ProSitePatterns Protein kinases ATP-binding region signature. 68 91 IPR017441 GO:0005524
Dod01g2262 538 ProSiteProfiles EF-hand calcium-binding domain profile. 399 434 IPR002048 GO:0005509
Dod01g2262 538 ProSiteProfiles EF-hand calcium-binding domain profile. 363 398 IPR002048 GO:0005509
Dod01g2262 538 CDD EFh 439 501 IPR002048 GO:0005509
Dod01g2262 538 Pfam EF-hand domain pair 438 501 IPR002048 GO:0005509
Dod01g2262 538 MobiDBLite consensus disorder prediction 1 16 - -
Dod01g2262 538 ProSitePatterns EF-hand calcium-binding domain. 448 460 IPR018247 -
Dod01g2262 538 Gene3D Phosphorylase Kinase; domain 1 64 147 - -
Dod01g2262 538 SUPERFAMILY Protein kinase-like (PK-like) 60 329 IPR011009 -
Dod01g2262 538 PANTHER SERINE/THREONINE-PROTEIN KINASE 16 517 - -
Dod01g2262 538 ProSiteProfiles Protein kinase domain profile. 62 320 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dod01g2262 538 Pfam Protein kinase domain 62 320 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dod01g2262 538 SUPERFAMILY EF-hand 349 527 IPR011992 -
Dod01g2262 538 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g2262 Dod-Chr1 60386581 60391888 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g2262 1 536 EF-hand Containing Proteins AT5G19450 78.085 0.0 877
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Dod01g2262 Pkinase 7e-78 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g2262 K13412 - gmx:100790745 941.028
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g2262 01 60386581 60391888 Dod01g2262 01 60386581 60391888 ECH