Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g2255 ATGGGGACTCCTGAATTCCCAGATCTAGGGAAGCATTGTTCCGTTTCCGATTGCAAGCTCATCGATTTCTTGCCCTTCACTTGCGATCGCTGCAATCTGGTGTATTGTTTGGAGCACCGAAGTTATATTAAGCATCAGTGTACAAAAGCCAACAAACAAGATGTCACTGTTGTTATATGTCCACTTTGTGCGAAAGGAGTCCGCCTAATTCATGATCAAGACCCAAATATAACTTGGGAGAATCATGTTAACACTGACTGTGACCCGTCAAATTATGAGAAAGCCACAAAGAAGAAAAAATGCCCTGCCCCTGGATGCAGAGAGATCTTAGTATTCTCAAACACAATTAAGTGCAGGGACTGCATGGTTGACCATTGTTTGAAGCACCGGTTTGCACCCGATCACAAATGTCCTGGTCCCAAAACGTTGCAGACAAGTTTTTCATTCATGAATCTTGTGAATAGGAGTAGAAAAGAGGAGCCAAAGCCCAATTTGACATCAACCTCATCAGCTAAATGGACGACTAGCCTTCTTAACGCGGCTTCTAACATTAGAGCTTCTGCTGAAGCAGGCATGTCCAAATTGAGTGGCGAAATTAACCAAGCCTGGCAGACAGCAAGGGATGGGAAGGGACAAAGCAGTGGCAGTGGCAGTGGCAGTGGAAATAGAAATGGTCAAGTGGAGCAATGCCCTCAGTGTGGTGCAAAGTTTTCCTCGGTCACTACTTTGGTGGATCATGTGCAAAGAGTTCATGAAAGGAATGGCAACCGATCTGGGGTAAGGAAGAATGTGACAATTGATGCCTGTCCTAAGTGTAGTAAGGGATTTCTGGACCCGGTTGCCCTTGTGGAGCATGTTGAGAGGGAACATGGTGGTAGTTCTAGATCGTAG 891 0.4557 MGTPEFPDLGKHCSVSDCKLIDFLPFTCDRCNLVYCLEHRSYIKHQCTKANKQDVTVVICPLCAKGVRLIHDQDPNITWENHVNTDCDPSNYEKATKKKKCPAPGCREILVFSNTIKCRDCMVDHCLKHRFAPDHKCPGPKTLQTSFSFMNLVNRSRKEEPKPNLTSTSSAKWTTSLLNAASNIRASAEAGMSKLSGEINQAWQTARDGKGQSSGSGSGSGNRNGQVEQCPQCGAKFSSVTTLVDHVQRVHERNGNRSGVRKNVTIDACPKCSKGFLDPVALVEHVEREHGGSSRS* 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g2255 296 PANTHER ZINC FINGER AN1 AND C2H2 DOMAIN-CONTAINING STRESS-ASSOCIATED PROTEIN 13 1 295 - -
Dod01g2255 296 ProSitePatterns Zinc finger C2H2 type domain signature. 269 290 IPR013087 -
Dod01g2255 296 ProSitePatterns Zinc finger C2H2 type domain signature. 230 251 IPR013087 -
Dod01g2255 296 SMART AN1_Zf_4 101 142 IPR000058 GO:0008270
Dod01g2255 296 SMART AN1_Zf_4 13 52 IPR000058 GO:0008270
Dod01g2255 296 ProSiteProfiles Zinc finger AN1-type profile. 7 55 IPR000058 GO:0008270
Dod01g2255 296 Pfam AN1-like Zinc finger 101 140 IPR000058 GO:0008270
Dod01g2255 296 Pfam AN1-like Zinc finger 13 52 IPR000058 GO:0008270
Dod01g2255 296 Pfam C2H2-type zinc finger 229 251 - -
Dod01g2255 296 ProSiteProfiles Zinc finger AN1-type profile. 95 145 IPR000058 GO:0008270
Dod01g2255 296 Gene3D Classic Zinc Finger 198 295 - -
Dod01g2255 296 ProSiteProfiles Zinc finger C2H2 type domain profile. 267 295 IPR013087 -
Dod01g2255 296 PANTHER ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED 1 295 - -
Dod01g2255 296 MobiDBLite consensus disorder prediction 205 227 - -
Dod01g2255 296 SUPERFAMILY beta-beta-alpha zinc fingers 229 286 IPR036236 -
Dod01g2255 296 SMART c2h2final6 228 251 IPR013087 -
Dod01g2255 296 SMART c2h2final6 267 290 IPR013087 -
Dod01g2255 296 SUPERFAMILY AN1-like Zinc finger 55 142 IPR035896 -
Dod01g2255 296 Gene3D - 80 151 IPR035896 -
Dod01g2255 296 Gene3D - 2 60 IPR035896 -
Dod01g2255 296 ProSiteProfiles Zinc finger C2H2 type domain profile. 228 256 IPR013087 -
Dod01g2255 296 SUPERFAMILY AN1-like Zinc finger 6 52 IPR035896 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g2255 1 296 C2H2 Transcription Factor Family AT2G41835 60.067 8.86e-122 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dod01g2255 zf-AN1 6.3e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g2255 - - gmx:100806459 499.204
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g2255 01 60331184 60333847 Dod01g2255 01 60331184 60333847 ECH