Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g2250 ATGGGAATTCTGTGCTTGTTGCATCTTTTGCTTTGTTGGTATCTTTCAAGCTCTCAGCTTGTTGTTGGTGCTGAGCTACAGGACCAAGCTGCATTACTTGCCATCAGCAAAGAGCTTGGAGTCCCTGGATGGGATTCCAACAGCTCAAATTACTGCACTTGGCAAGGAGTCAGCTGTGGCAATCACTCAATGGTGGAGAAGCTTGATCTAGCTCACCGGAATCTTCGAGGTAATGTGACTCTAATGTCTGAGCTGAAAGCTTTGAAGTGGCTTGACCTGTCAAATAATAACTTTGATGGATTGATTCCTCCTGCTTTTGGAAACCTATCTGATCTTGAAGTTCTGGATTTGTCCACAAATAAGTTTGAGGGTTCAATTCCACCACAATTGGGTGCTCTCAGGAGCCTCAGATCATTGAACCTTTCCAATAATGTGCTTGTGGGGGAAGTACCTATGGAGCTTCATGGCCTAGAGAATTTGCAGGATTTGCAAATTTCCAGTAATCACTTGAGTGGTTTAATACCTTCTTGGGTTGGCAATTTGACCAACCTGAGGGTTTTTACTGCTTATGAGAATCGTTTAGGCGGCGAGATTCCACATTCTCTAGGCTTGATTTCTGAGCTTCAAATACTTAACCTGCACTCTAACCAGCTTGAGGGCCCAATACCAGCAAGCATTTTTGCTCCAGGGAAGCTAGAAGTTCTGGTTCTCACCCAGAATAATTTTAGTGGTGATCTTCCTGAGGAAATTGGGAATTGCCATGCCCTTTCCAATATTCGAATTGGCAACAACCGTCTAGCAGGTTCTATTCCAACGACGATTGGAAATCTTAGTAGCCTAACATACTTTGAAGCTGATAATAATAATCTTTCTGGCGAGTTAGTGCCAGAATTTGCCCAGTGTTCCAATGTCACCCTCTTGAATTTAGCTTCAAATGGACTTATTGGAACAATTCCACAAGAATTTGGACAACTTATGAACCTTCAGGAGTTAATTCTCTCTGGAAATGGCCTATATGGAGATATCCCGAGGTCAATTCTGAGTTGCAAAAATCTTAACAAGCTTGATATTAGCAACAACAGATTCAATGGGACAATTCCAAGTGAAATCTGCAATATTTCTCGGTTGCAGTACTTGCTGTTGGGTCAGAATTCCATAAGAGGAGAGATCCCTCATGAAATTGGAAATTGTGCAAAACTTCTTGAGTTACAATTGGGCAGTAACTATTTGACTGGAACTATTCCTCCTGAAATCGGTCACATTAGGAACTTACAGATAGCTTTAAACCTGAGCTTCAATCATCTTCATGGACCACTGCCCCCTGAATTAGGAAGACTGGACAAACTTGTTTCTCTGGATGTTTCAAACAATCGGCTCTCAGGTAATATACCAGCTGAGCTCAAGGGAATGTTGAGCTTGATAGAGGTGAACTTCTCAAATAATCTTTTTGGAGGGCCCGTTCCAACATTTGTACCATTCCAAAAGAGTCCTAGTTCAAGTTTTATGGGCAATAAAGGGCTTTGTGGAGAGCCATTGAACTCTTCATGTGGAGATCTTTATGATGATCGCAAGACCTATCATCACAGGGTTTCTTACAGAATCATATTGGCTGTAATTGGTTCAGGTTTGGCAGTTTTTATGTCAGTAAGTATAGTTGTGTTGCTGTTTATGATCAGAGAGAGGCAAGAAAAAGTAGCCAAAGATACTGGGATTATTGATGATGGAACCAATGATAAACCAACAATAATAGCAGGGAGTGTTTTTGTTGACAATCTAAAGCAAGCAGTAGACCTTGATGCTGTTGTTAGAGCAACTCTGAAAGACTCTAATAAGCTCAGCAGTGGAACTTTCAGCACAGTTTACAAGGCAGTCATGCCTTCTGGGGTGGTCTTATCTGTAAGGAGATTGAAGTCGGTTGACAAGACAATAATCAACCACCAGAACAAGATGATTAGAGAACTTGAAAGACTGGGCAAAGTCTGTCATGAGAATCTAGTGCGACCGATTGGCTATGCTATTTATGAAGATGTTGCTCTTGTCTTGCATAATTATTTTCCAAATGGAACATTGGCTCAGCTTCTTCATGAATCGACAAGGCAGCCAGAATATCAGCCTGACTGGCCTTCTAGGCTATCCATTGCCATTGGAGTCGCAGAAGGTTTGACTTTCCTTCATCACGTGGCAATTATCCATCTCGACATTTCTTCTGGCAATGTTCTTCTTGATGCAAATTTCAAGCCATTGGTTGGGGAGATTGAGATTTCAAAACTTCTGGATCCAACAAAAGGCACTGCAAGTATTAGTGCAGTCGCTGGTTCCTTTGGTTACATACCACCAGAATATGCGTATACGATGCAAGTTACAGCGCCAGGAAATGTTTATAGCTATGGTGTTGTTCTGTTGGAAATCCTTACGACTCGACAACCAGTTGATGAGGATTTTGGCGAAGGTGTAGATTTGGTGAAGTGGGTTCACAGTGCTCCGGTAAGAGGGGAAACTCCAGAGCAGATACTGGATGCAAGGCTTAGTACTGTTTCCTTTGGCTGGAGGAAAGAAATGCTTGCTGCTCTAAAGGTTGCATTGCTCTGCACCGACACAACGCCAGCCAAGCGACCAAAAATGAAGAATGTAGTAGAGATGCTTCAAGAGATAAATCAAAACTGA 2664 0.4215 MGILCLLHLLLCWYLSSSQLVVGAELQDQAALLAISKELGVPGWDSNSSNYCTWQGVSCGNHSMVEKLDLAHRNLRGNVTLMSELKALKWLDLSNNNFDGLIPPAFGNLSDLEVLDLSTNKFEGSIPPQLGALRSLRSLNLSNNVLVGEVPMELHGLENLQDLQISSNHLSGLIPSWVGNLTNLRVFTAYENRLGGEIPHSLGLISELQILNLHSNQLEGPIPASIFAPGKLEVLVLTQNNFSGDLPEEIGNCHALSNIRIGNNRLAGSIPTTIGNLSSLTYFEADNNNLSGELVPEFAQCSNVTLLNLASNGLIGTIPQEFGQLMNLQELILSGNGLYGDIPRSILSCKNLNKLDISNNRFNGTIPSEICNISRLQYLLLGQNSIRGEIPHEIGNCAKLLELQLGSNYLTGTIPPEIGHIRNLQIALNLSFNHLHGPLPPELGRLDKLVSLDVSNNRLSGNIPAELKGMLSLIEVNFSNNLFGGPVPTFVPFQKSPSSSFMGNKGLCGEPLNSSCGDLYDDRKTYHHRVSYRIILAVIGSGLAVFMSVSIVVLLFMIRERQEKVAKDTGIIDDGTNDKPTIIAGSVFVDNLKQAVDLDAVVRATLKDSNKLSSGTFSTVYKAVMPSGVVLSVRRLKSVDKTIINHQNKMIRELERLGKVCHENLVRPIGYAIYEDVALVLHNYFPNGTLAQLLHESTRQPEYQPDWPSRLSIAIGVAEGLTFLHHVAIIHLDISSGNVLLDANFKPLVGEIEISKLLDPTKGTASISAVAGSFGYIPPEYAYTMQVTAPGNVYSYGVVLLEILTTRQPVDEDFGEGVDLVKWVHSAPVRGETPEQILDARLSTVSFGWRKEMLAALKVALLCTDTTPAKRPKMKNVVEMLQEINQN* 888
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g2250 887 Gene3D Ribonuclease Inhibitor 229 518 IPR032675 -
Dod01g2250 887 SUPERFAMILY L domain-like 199 513 - -
Dod01g2250 887 Pfam Leucine rich repeat 87 146 IPR001611 GO:0005515
Dod01g2250 887 SUPERFAMILY L domain-like 42 300 - -
Dod01g2250 887 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 1 885 - -
Dod01g2250 887 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE TYROSINE-PROTEIN KINASE PXC3 1 885 - -
Dod01g2250 887 SUPERFAMILY Protein kinase-like (PK-like) 604 884 IPR011009 -
Dod01g2250 887 Gene3D Ribonuclease Inhibitor 25 174 IPR032675 -
Dod01g2250 887 Pfam Leucine rich repeat N-terminal domain 27 59 IPR013210 -
Dod01g2250 887 CDD STKc_IRAK 612 884 - -
Dod01g2250 887 Pfam Protein tyrosine and serine/threonine kinase 609 881 IPR001245 GO:0004672|GO:0006468
Dod01g2250 887 Gene3D Phosphorylase Kinase; domain 1 577 684 - -
Dod01g2250 887 Gene3D Transferase(Phosphotransferase) domain 1 685 887 - -
Dod01g2250 887 SMART LRR_typ_2 109 133 IPR003591 -
Dod01g2250 887 SMART LRR_typ_2 205 229 IPR003591 -
Dod01g2250 887 SMART LRR_typ_2 446 469 IPR003591 -
Dod01g2250 887 SMART LRR_typ_2 157 180 IPR003591 -
Dod01g2250 887 SMART LRR_typ_2 373 397 IPR003591 -
Dod01g2250 887 SMART LRR_typ_2 85 108 IPR003591 -
Dod01g2250 887 SMART LRR_typ_2 325 349 IPR003591 -
Dod01g2250 887 Gene3D Ribonuclease Inhibitor 175 228 IPR032675 -
Dod01g2250 887 ProSiteProfiles Protein kinase domain profile. 606 887 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dod01g2250 887 ProSitePatterns Tyrosine protein kinases specific active-site signature. 729 741 IPR008266 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g2250 Dod-Chr1 60301638 60305925 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g2250 1 886 Receptor kinase-like Gene Family AT2G41820 71.654 0.0 1293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Dod01g2250 PK_Tyr_Ser-Thr 2.1e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g2250 - - adu:107492611 1598.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g2250 01 60301638 60305925 Dod01g2250 01 60301638 60305925 ECH