Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g2239 ATGGCTTCGTCTTCCTCCGATCCCGGCAAGTCTGATGCCGGCGGCGGTGCGGCGGAGACGTCGGAGGCCGCGGCGACGGTGGCGGCGGCGAACGATCAGCTGCTGCTGTACAGAGGACTGAAGAAAGCGAAGAAAGAGAGAGGATGTACCGCCAAAGAGCGCATCAGCAAGATGCCTCCGTGTGCTGCCGGAAAACGCAGCTCCATATACCGCGGCGTCACGAGGCATAGATGGACTGGTCGTTACGAGGCACATCTTTGGGATAAGAGTACGTGGAATCAGAATCAGAATAAGAAAGGGAAGCAAGTTTACTTGGGGGCTTATGATGACGAGGAGGCAGCAGCTAGAGCATACGACCTTGCTGCTCTGAAATACTGGGGTCCTGGGACTCTCATAAACTTCCCTGTGACTGATTATACAAGAGATCTTGAAGAAATGCAGAATGTTTCCAGGGAGGACTACCTAGCGTCTTTGCGGCGGAAAAGCAGTGGTTTTTCAAGAGGAATATCAAAATATCGTGCACTCTCCAGTCGATGGGAGCCATCATATGGTCGTATGGCTGGATCTGATTACTTCACTAGTATGCAGTATGGTGATGATTCAACAGCAGAAACTGAATATGTAAGTGGTTTCTGCAGAGAGAGAAAGATTGATTTGACAAGTCACATCAAGTGGTGGGCATCTAATAAAAGTCGACAACCTGATGGTGGAACAAGATTATCAGAAGAAAAGAAACATGGGTTTGCTGGAGATATCTGCAGTGAACTTAAAACATTGGAACAGAAAGTCCAACCTACTGAACCATACCAGATGCCGGAGTTAGGAAAGCCCCACAATGGGAAAAAACATAAAAGTTCTGCCGGCTCTGCCTTAAGTATTTTGTCACAATCTGCTGCTTACAAGAGCTTGCAGGAGAAAGCAGCAAAGAGACAGGAGAATAGTACTGATAATGATGAGAATGAAAACAAAAATACAGTCAATAAGTTGGATCATGGCAAAGCTGTTGAGAAATCTTCAAATACTGATGGTGGCAACGATCGACTTGACATTGCAATGGGGATGAGCGGGGCATTGTCTCTTCAGAGAAATGTATACCCGTTGACTCCATTCTTGTCCGCACCGCTCTTGACAGCCTACAATGCTGTCGATCCATTGGTAGATCCTGTTCTCTGGACATCTCTCGTTCCTATACTGCCTGCTGGCCTTCCTCGTACGGCTGAGGTTACAAAGACCGAGACCAGTTCAACGTACACTATCTTTCAGCCAGAGGAGTGA 1275 0.4769 MASSSSDPGKSDAGGGAAETSEAAATVAAANDQLLLYRGLKKAKKERGCTAKERISKMPPCAAGKRSSIYRGVTRHRWTGRYEAHLWDKSTWNQNQNKKGKQVYLGAYDDEEAAARAYDLAALKYWGPGTLINFPVTDYTRDLEEMQNVSREDYLASLRRKSSGFSRGISKYRALSSRWEPSYGRMAGSDYFTSMQYGDDSTAETEYVSGFCRERKIDLTSHIKWWASNKSRQPDGGTRLSEEKKHGFAGDICSELKTLEQKVQPTEPYQMPELGKPHNGKKHKSSAGSALSILSQSAAYKSLQEKAAKRQENSTDNDENENKNTVNKLDHGKAVEKSSNTDGGNDRLDIAMGMSGALSLQRNVYPLTPFLSAPLLTAYNAVDPLVDPVLWTSLVPILPAGLPRTAEVTKTETSSTYTIFQPEE* 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g2239 424 MobiDBLite consensus disorder prediction 305 343 - -
Dod01g2239 424 Gene3D AP2/ERF domain 69 137 IPR036955 GO:0003700|GO:0006355
Dod01g2239 424 SMART rav1_2 69 141 IPR001471 GO:0003700|GO:0006355
Dod01g2239 424 MobiDBLite consensus disorder prediction 268 288 - -
Dod01g2239 424 Pfam AP2 domain 69 127 IPR001471 GO:0003700|GO:0006355
Dod01g2239 424 MobiDBLite consensus disorder prediction 302 347 - -
Dod01g2239 424 ProSiteProfiles AP2/ERF domain profile. 69 135 IPR001471 GO:0003700|GO:0006355
Dod01g2239 424 PRINTS Ethylene responsive element binding protein signature 117 137 IPR001471 GO:0003700|GO:0006355
Dod01g2239 424 PRINTS Ethylene responsive element binding protein signature 70 81 IPR001471 GO:0003700|GO:0006355
Dod01g2239 424 SUPERFAMILY DNA-binding domain 68 136 IPR016177 GO:0003677
Dod01g2239 424 PANTHER BNAA03G19580D PROTEIN 2 422 - -
Dod01g2239 424 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 2 422 - -
Dod01g2239 424 MobiDBLite consensus disorder prediction 1 23 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g2239 Dod-Chr1 60038875 60043139 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g2239 1 422 AP2-EREBP Transcription Factor Family AT2G41710 61.327 1.57e-163 466
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dod01g2239 AP2 1.1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g2239 K09285 - gmx:100814117 730.324