LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dod01g2238	ATGGAGGGAGCAAGTGAGAAAGGGTTATTCGAATGTGCAAGGAAGTGCTCTCCACCACCCTTCTTGCTGAAGACATACATGCTTGTCGAGGATCCGGCCACCGACAGCATCGTATCGTGGAATGCCGACGGGACGGCGTTTGTCGTGTGGCAGCCGGCGGAGTTTGCCCGTGATCTCCTCCCTACGCTCTTCAAGCACAGCAACTTCTCTAGCTTTGTCCGCCAGCTCAATACCTATGGCTTTCGTAAAGTTGCAACAAGCAGATGGGAGTTCTGCAACGAAAAGTTTAGGAAGGGAGAGAGAGAACTTCTATGTGAGATTAGAAGAAGAAAAGCCTGGACAACCAAACAACAACCAATTACTACTACTACTGCACCGAACCAAGCCACAATACCCCAAGAGTCAGATGAGGACCAAAGGTCCTCATCAACCTCATCATCTTCTGGTTACACAACTCTAGTGGATGAGAACAAGCGGCTCAAGAAGGAGAATGGGGTGTTGAGTTATGAGCTCACAACCATGAAAAGGAAGTGTAGGGAACTGCTTGATTTGGTGGCGAAATATTCGCACGCAAAGGAAGAGGAAGAAGATGAAAGGCCAATGCTGTTTGGGGTGAGGCTGGAAGTGCAAGGAGAGAGGGAGATGAAGAGGAAGAGAGCTGAGATAAGTGAAAGCGCAAGCATTTTGCTGTCACAGTCATGCAAATAG	708	0.4873	MEGASEKGLFECARKCSPPPFLLKTYMLVEDPATDSIVSWNADGTAFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKVATSRWEFCNEKFRKGERELLCEIRRRKAWTTKQQPITTTTAPNQATIPQESDEDQRSSSTSSSSGYTTLVDENKRLKKENGVLSYELTTMKRKCRELLDLVAKYSHAKEEEEDERPMLFGVRLEVQGEREMKRKRAEISESASILLSQSCK*	236

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dod01g2238	235	MobiDBLite	consensus disorder prediction	116	154	-	-
	Dod01g2238	235	SMART	hsfneu3	17	110	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Dod01g2238	235	Gene3D	-	13	111	IPR036388	-
	Dod01g2238	235	Coils	Coil	178	198	-	-
	Dod01g2238	235	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	5	235	IPR027725	-
	Dod01g2238	235	PANTHER	HEAT STRESS TRANSCRIPTION FACTOR B-3	5	235	-	-
	Dod01g2238	235	Pfam	HSF-type DNA-binding	21	110	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Dod01g2238	235	PRINTS	Heat shock factor (HSF) domain signature	59	71	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Dod01g2238	235	PRINTS	Heat shock factor (HSF) domain signature	21	44	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Dod01g2238	235	PRINTS	Heat shock factor (HSF) domain signature	72	84	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Dod01g2238	235	MobiDBLite	consensus disorder prediction	116	155	-	-
	Dod01g2238	235	ProSitePatterns	HSF-type DNA-binding domain signature.	60	84	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Dod01g2238	235	SUPERFAMILY	"Winged helix" DNA-binding domain	17	110	IPR036390	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dod01g2238	Dod-Chr1	59948327	59952132	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dod01g2238	18	208	HSF	AT2G41690	58.937	4.05e-75	226

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Dod01g2238		HSF_DNA-bind	7.6e-32	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Dod01g2238	K09419		-	gmx:100802739	377.867