Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g2228 ATGGACAGCCTCCTCAATCTCAAGGACTTCGAATTGGAGCCCAAGAATCCCTCCCCGGAAGCCCTCCGCCGCTGGAGATGCGCCGTCAGCTTCGTCGTCAAGAACCGCCGCCGCCGCTTCCGTATGGTCGCCGATCTCGACAAACGCTTAGAAGCTGAGCAGATTAAGCAGGGAATCAAGGAACAAGTTCGGATTGCTCTCTATGTTCAAAAGGCAGCATTGCAATTTATTGATGCCGGTAATCGAGTTGAATACAGGCTACCAGAAGAGGCAAGAGAAGCCGGTTTTGGTATTCATCCTGATGAGATTGCCTCTATTGTTCGTGGCCATGATTACAAGAGATTGATTCATATTGGTGGTGTTGAAGCCATTGCGAGGAAACTTATAGTCTCAGTGGATGAAGGTATCAGTGAAGAGAGTATAAATAGCAGACAAAAGATATATGGAGCCAACCGTTATACAGAGAAACCTTCTAGAAGCTTCCTGATGTTTGTGTGGGATGCGCTGCAGGACTTAACTCTAATCATTCTTATGGTTTGTGCTATAGTTTCTATTGGTGTAGGGATTGCTAGTGAAGGGTTTCCAAAAGGAATGTATGATGGTGTCGGAATCATATTTAGTGTATTCTTGGTTGTCATTGTTACTGCTGTCAGTGACTACCAGCAATCCCTGCAGTTCAGAGATTTAGACAAAGAAAAGAAGAAGATCTCTGTCCAGGTCACCAGGGATGGGAAAAGAAAGACCATCTCAATTTATGATATAGTAGTTGGCGATATTATTCATTTGTCAACTGGTGATCAAGTTCCAGCTGATGGGATTTATATATCTGGATACTGTCTACTTATAGATGAATCTTGTTTGTCAGGTGAGAGCGAACCTGTAAATATAAATGAGGAAAAACCTTTTCTCCTCTCAGGAACCAAAGTGCAGGATGGTCAGGGGAAGATGTTAGTTACAACTGTCGGCATGAGGACTGAATGGGGAAAATTGATGGAAACTCTAAGTGAGGGAGGAGAGGATGAGACACCATTGCAGGTGAAGTTGAACGGAGTGGCTACAGTTATTGGTAAAATTGGTTTAGGTTTTGCCTGTCTGACATTTGTGGTGCTGACAGTTAGGTTTATAGTTGAAAAGGCACTTCATGGTGAGTTTAGTAGTTGGTCTTCAAATGATGCATTGAAGCTACTGGACTTCTTTGCTATTGCTGTAACCATAATAGTTGTTGCGGTTCCTGAAGGATTACCATTGGCTGTGACACTTAGTCTTGCCTTTGCAATGAAAAAGTTAATGAATAACAGGGCACTTGTGAGGCATCTTTCTGCTTGTGAGACTATGGGTTCAAGTAGTTGCATTTGCACAGATAAGACAGGGACATTGACCACTAACCATATGGTTGTTAACAAAATATGGCTGTGCGAAAAAGCCATTCAGATGAAAGGTAAAGAGAGTGCAGAAGAACTGAAAACAACTTTATCTGATGGAGTTCTAAGCATCCTTTCTCGAGCTATATTTCAAAATACTTCTGCTGATGTAGTTAATGATAAAGATGGAAATAACAAAATATTGGGAACTCCAACAGAATCAGCACTAGTGGAATTTGGCTTGCTTTTGGGTGCTGATTGTGATGCCCAGCATAGAGTTTACAAGATACTCAAGGTTGAGCCTTTCAATTCAGTGAGGAAGAAGATGTCTGTGCTTGTTGGTCTTCCTGATGGAGGTGTCCAAGCTTTCTGCAAAGGTGCATCAGAAATAATACTAAAAATGTGTGACAAAATTATCGATTGCAATGGAGAAGTTGTAGACCTTCCTCAAGACAGGGCAAATAGTGTCTCTGATGTTATAAATGGATTTGCCTCTGAAGCTTTGAGAACTCTTTGTTTAGCTGTTAAAGATATAAATGAAACTGAGGGGGAAATTAACATCCCTGATAGTGGCTATACTCTTATAGCCATAGTAGGAATCAAGGATCCTGTACGCCCAGGTGTTAAGGAAGCTGTTAAAATTTGTTTAGCAAGTGGAATAACTGTCCGCATGGTCACTGGTGATAACATTCATACAGCTATAGCTATTGCTAAAGAATGTGGTATACTTACTGAGGATGGTGTAGCCATTGAAGGACTAGATTTTCGTAACTTGTCTCCACAGCAAATGCAGCATATCATACCAAAAATTCAGGTGATGGCACGATCCTTACCGCTCGACAAGCATAAGTTAGTGACCCATTTGAGGAGTACTGATGAGGTTGTAGCTGTTACTGGTGATGGAACCAATGATGCTCCTGCACTGCATGAGGCAGACATTGGACTTGCTATGGGCATAGCTGGAACAGAGGTTGCCAAAGAAAATGCTGACGTCATTATAATGGATGACAATTTTGCGACTATTGTTAATGTGGTCAAATGGGGACGAGCAGTATACATAAACATTCAAAAATTTGTGCAGTTCCAGTTAACTGTTAATGTTGTTGCTCTGATTATCAACTTTGTTTCTGCATGCATCACTGGATCTGCTCCTCTCACAGCTGTCCAGTTGCTTTGGGTCAACTTGATTATGGACACTCTGGGTGCATTAGCCCTGGCTACTGAACCTCCTAACGATGAACTTATGAGAAGACCCCCAGTTGCAAAGGGAGCAAGCTTTATAACCAAACCGATGTGGAGGAACATCATTGGTCAAAGTATATATCAATTAATTGTCCTTGCTATTCTGAATTTTGATGGGCTGAGGCTACTCAATATCAGCGGTTCGGATGCAACTAAAGTGCTCAACACTTTGATATTCAACTCCTTTGTATTTTGCCAGGTGTTTAATGAGATAAACAGCAGAGATATTGAAAGGATAAATGTATTCAGAGGCATCTTTAGCAGCTGGATATTTTTGTTGATAGTTTTCGTCACAGTGGCATTTCAAGTGGTCATAGTTGAGTTCCTGGGAGCATTTGCCAGCACGGTGCCTTTAAACTGGCAACTTTGGTTACTCAGTATCTTAATTGGTGCAGTTAGCGTGCCTCTAGCTGCTATCCTCAAGTGCATCCCAGTTGACACTATCAAGCACCATGATGGTTATGAGCTACTACATTCTGGTCCTGACCAGGCATAA 3099 0.4188 MDSLLNLKDFELEPKNPSPEALRRWRCAVSFVVKNRRRRFRMVADLDKRLEAEQIKQGIKEQVRIALYVQKAALQFIDAGNRVEYRLPEEAREAGFGIHPDEIASIVRGHDYKRLIHIGGVEAIARKLIVSVDEGISEESINSRQKIYGANRYTEKPSRSFLMFVWDALQDLTLIILMVCAIVSIGVGIASEGFPKGMYDGVGIIFSVFLVVIVTAVSDYQQSLQFRDLDKEKKKISVQVTRDGKRKTISIYDIVVGDIIHLSTGDQVPADGIYISGYCLLIDESCLSGESEPVNINEEKPFLLSGTKVQDGQGKMLVTTVGMRTEWGKLMETLSEGGEDETPLQVKLNGVATVIGKIGLGFACLTFVVLTVRFIVEKALHGEFSSWSSNDALKLLDFFAIAVTIIVVAVPEGLPLAVTLSLAFAMKKLMNNRALVRHLSACETMGSSSCICTDKTGTLTTNHMVVNKIWLCEKAIQMKGKESAEELKTTLSDGVLSILSRAIFQNTSADVVNDKDGNNKILGTPTESALVEFGLLLGADCDAQHRVYKILKVEPFNSVRKKMSVLVGLPDGGVQAFCKGASEIILKMCDKIIDCNGEVVDLPQDRANSVSDVINGFASEALRTLCLAVKDINETEGEINIPDSGYTLIAIVGIKDPVRPGVKEAVKICLASGITVRMVTGDNIHTAIAIAKECGILTEDGVAIEGLDFRNLSPQQMQHIIPKIQVMARSLPLDKHKLVTHLRSTDEVVAVTGDGTNDAPALHEADIGLAMGIAGTEVAKENADVIIMDDNFATIVNVVKWGRAVYINIQKFVQFQLTVNVVALIINFVSACITGSAPLTAVQLLWVNLIMDTLGALALATEPPNDELMRRPPVAKGASFITKPMWRNIIGQSIYQLIVLAILNFDGLRLLNISGSDATKVLNTLIFNSFVFCQVFNEINSRDIERINVFRGIFSSWIFLLIVFVTVAFQVVIVEFLGAFASTVPLNWQLWLLSILIGAVSVPLAAILKCIPVDTIKHHDGYELLHSGPDQA* 1033
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g2228 1032 Gene3D - 462 657 IPR023299 GO:0000166
Dod01g2228 1032 Pfam haloacid dehalogenase-like hydrolase 737 796 - -
Dod01g2228 1032 SUPERFAMILY Calcium ATPase, transmembrane domain M 117 1013 IPR023298 -
Dod01g2228 1032 Pfam Cation transporter/ATPase, N-terminus 117 184 IPR004014 -
Dod01g2228 1032 SMART Cation_ATPase_N_a_2 115 189 IPR004014 -
Dod01g2228 1032 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 458 662 IPR023299 GO:0000166
Dod01g2228 1032 SUPERFAMILY Calcium ATPase, transduction domain A 237 333 IPR008250 -
Dod01g2228 1032 Gene3D - 135 335 - -
Dod01g2228 1032 Pfam Cation transporting ATPase, C-terminus 837 1010 IPR006068 -
Dod01g2228 1032 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 718 840 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Dod01g2228 1032 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 547 698 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Dod01g2228 1032 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 204 475 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Dod01g2228 1032 ProSitePatterns E1-E2 ATPases phosphorylation site. 454 460 IPR018303 -
Dod01g2228 1032 PRINTS P-type cation-transporting ATPase superfamily signature 650 661 - -
Dod01g2228 1032 PRINTS P-type cation-transporting ATPase superfamily signature 672 682 - -
Dod01g2228 1032 PRINTS P-type cation-transporting ATPase superfamily signature 283 297 - -
Dod01g2228 1032 PRINTS P-type cation-transporting ATPase superfamily signature 452 466 - -
Dod01g2228 1032 PRINTS P-type cation-transporting ATPase superfamily signature 752 771 - -
Dod01g2228 1032 PRINTS P-type cation-transporting ATPase superfamily signature 776 788 - -
Dod01g2228 1032 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 114 1013 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Dod01g2228 1032 PRINTS H+-transporting ATPase (proton pump) signature 752 768 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Dod01g2228 1032 PRINTS H+-transporting ATPase (proton pump) signature 784 809 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Dod01g2228 1032 PRINTS H+-transporting ATPase (proton pump) signature 610 628 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Dod01g2228 1032 CDD P-type_ATPase_Ca_PMCA-like 141 885 - -
Dod01g2228 1032 SFLD p-type atpase 434 804 IPR044492 -
Dod01g2228 1032 SUPERFAMILY HAD-like 451 857 IPR036412 -
Dod01g2228 1032 Gene3D - 167 1011 - -
Dod01g2228 1032 Gene3D - 449 797 IPR023214 -
Dod01g2228 1032 Pfam Cation transport ATPase (P-type) 506 592 - -
Dod01g2228 1032 Gene3D - 17 79 - -
Dod01g2228 1032 PANTHER CALCIUM-TRANSPORTING ATPASE 47 1018 - -
Dod01g2228 1032 Pfam E1-E2 ATPase 235 431 - -
Dod01g2228 1032 Pfam Ca2+-ATPase N terminal autoinhibitory domain 8 50 IPR024750 GO:0005516
Dod01g2228 1032 SFLD Haloacid Dehalogenase 434 804 - -
Dod01g2228 1032 PANTHER CATION TRANSPORTING ATPASE 47 1018 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g2228 Dod-Chr1 59761396 59772320 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g2228 59 1032 Primary Pumps ATPases AT3G57330 73.436 0.0 1485
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g2228 K01537 - gmx:100783489 1684.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g2228 01 59761396 59772320 Dod01g2228 01 59761396 59772320 ECH