Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g2223 ATGGATCATCACAGAACAAAATCGAAGGACTCGCTCTCCTACTCCACTCTCTTCAATCTCGAGTCTTTGATGAACTTTCAACTTCCAGAACAAGATGGTGATTTCGATTATTATGGGAATAGTAGTCAGGATGAGAGCAGAGATAGCCAAGTAGGGCGGGCAATTGCAAATCACAGTAATGGGAATATGCGTGGTAATTCATTGAAGAAGAGGAGGCGGTCTCAAAACAGTGACAACGAGGAAAGGAGTAGTTTTTATGGGACGCACATGACCGAGGAGCGGTATCGATCGATGCTTGGAGAACATATTCAGAAATACAAGAGGAGGTTTAAGGATACCTCATCTAGTCCTGCCCAAAATCATGTCGTTGCTCCACCTCTCAAAAGCAGTGCGGGCTTAAAAGCTCGCAAGTCAGGGAATGAGCACAGGCGAGGATTACATGCTGCAGAGGCTGTGTCTGAATGGATGAATGGTTCCAATTCTCAGAAATTGGGAAATCACCGTGATTCGGACCTCATGCAGCAATGTGGCACTAATAGGACTATATATGAACCTGCTTTTTTGGATATTGGGGACAGTATCACTTACAAGATTCCTCCAATTTATGAAAAGTTAGCTGCAATGCTAAACCTTCCAAGCTTCTCGGATATCCATGTTAAGGATTTCTACTTAAAGGGTACCTTGGATTTGGGCTCTTTGGCTGAAATGATGGCTGCTGATAAAAAATTTGGGAATAGAAACCGAATTGGCATGGGGGAAACCATACCCCTGTATGAATCACTTCAGGCACGATTAAAGGTCATGTCAGCTTCTAATTCAGCTCATAAATTCAGCCTGAAAGTATCCGATGCTGGTTTGAATTCCTCCATTCCAGAGGGGGCGGCTGGAAGCATAAAGCGATCTATTTTGTCTGAGGGTGGTGTGTTGCAGGTTTATTATGTGAAGGTTTTGGAGAAAGGCGACACCTATGAGATCATTGAACGAAGCCTACCTAAGAAGCAAAAGGTGAAGAAGGACCCTGCTTTGATAGAGAAGGAAGAAATGGAAAGAATTGGAAAGATTTGGGTGAACATTGTAAGAAGAGATATACCAAAGCATCACAGGAACTTCACTGGTTTTCATCGAAAGCAGCTTGTTGATGCCAAGAGAGTTGCAGAGAACTGTCAACGAGAGGTTAGACTGAAAGTTAGTAGATCACTTAAATGGACAAGGACTGCTAGTATACGCACCCGGAAACTAGCTAGAGACATGTTGCTGTTCTGGAAGCGAATAGATAAGGAGATGGCTGAAGTGAGGAAAAGAGAGGAGAAAGAAGCTGCTGAAGCTTTGAGGCGTGAACAGGAACTTCGTGAAGCAAAGAGACAGCAGCAAAGGCTTAATTTTCTCATACAACAAACTGAGCTGTACAGTCACTTTATGCAGAACAAGTCAAACTTATTATCGGAAGCTCTGCCCAAGGTTGATGAAAGTACTAATGACCAAGATGCACAGATCGACTTTTCAGATGCTGGGCCTAGCGAAGCGGAAGACCCGGAAGAGGCTGAGTTGAAGAAGGAAGCACTGAAGGCTGCTCAAGAAGCTGTTTCTAAACAGAAAATGTTGACAAGTGCTTTTGACACTGAATGCTTGAGGCTGCGCCAGGCTGATGATACTGATTTACTATCCCCAGAAGTTGCTGGAGCAAGTAATATTGATTTGCAAACCCCCTCAACCATGCCAGTGGCATCCACAGTTCGGACACCAGAATTGTTTAAAGGTTGTCTCAAAGAGTATCAGCTAAAAGGTCTTCAGTGGCTAGTTAATTGTTATGAGCAGGGTTTAAATGGAATTCTTGCTGATGAAATGGGACTTGGAAAGACCATTCAGGCTATGGCTTTTTTAGCCCATTTAGCTGAGGAGAAAAACATATGGGGGCCCTTTCTGGTTGTTGCACCTGCTTCTGTATTGAACAATTGGAATGAGGAACTTGAGCGATTTTGCCCTGAACTGAAAAGACTTCCGTATTGGGGTGGGGTTGCAGAGCGGTCAGTGCTTAGGAAAAGTATTAACCCAAAGGATCTTTATCGTAGGGAAGCTAAATTTCATGTTCTCATCACAAGCTATCAGTTATTAGTAACTGATGAGAAGTTTTTCCGGCGTGTGAAATGGCAATATATGGTTTTAGATGAAGCTCAGGCAATCAAAAGTTCAACCAGTATAAGATGGAAGACACTCCTCAGTTTTAATTGTCGGAATCGGCTTCTGCTGACTGGTACACCTATTCAGAATAATATGGCAGAGTTGTGGGCTCTTCTGCACTTCATTATGCCAACTTTATTCGACAGCCATGAGCAGTTTAATGAGTGGTTTTCTAAAGGAATTGAGAACCATGCAGAACATGGGGGTACTTTGAATGAGCACCAATTGAATAGATTGCATTCAATTCTAAAGCCTTTCATGCTGCGGCGTGTTAAAAAAGATGTAATTTCTGAGCTGACTACAAAAACTGAGGTGACAGTGCATTGCAAGCTGAGCTCTCGGCAGCAGGCTTTCTATCAAGCGATCAAAAACAAGATATCTCTTGCTGAGCTGTTTGATAGTAATCGTGGGCAGCTCAATGAGAAGAGAATTTTGAATTTAATGAACATTGTTATTCAATTAAGGAAGGTTTGCAACCATCCAGAACTATTTGAAAGGAGTGAGGGAAGCACATACCTTCACTTTGGAGCGATTCCAAATTCCCTTCCACCTCCTCCATTTGGGGAGTTGGAGGATGTGTATTATTCTGGTGGTCACAACCCCATATCATATGAGATACCAAAACTTGTATATCAAGAAATTATGCAGAGTTCTGAAACTCTCTGTTCAGCTGTTGGACTTGGTGTCTACAGAGAATCTTTTCAGAAACATTTTAATATTTTTAGACCGGAAAATGTTTATCGATCTGTTTTCTCAGAAGATATGCATGTTAAAAGTGGAAGCTTTGGTTTTACACATTTGATGGGTTTGTCTCCACAAGAGGTGACATTTCTGGCTACTGGTTCTTTCATGGAGCGGTTATTATTTTCTATGAGATTGGAACAAAAATTCATTGATGAAGCTGTAGACTTTCTTATGGAGACCATAGATGATGATCCAGAATGTAGTTACCTTGAGAAAGGGAAGGTGAGAACTGTTACACGTATGTTATTGATACCATCGAGATCTGAGACTAAATTTCTTCAAGGAAGATTGCCAACTGGGCCCAGCCATGCTCCTTTTGAGGCCTTGGTAGTCTCACATCAGGATAGACTTTTGTCAAATGCAAGGCCTCTTCACTCAGCTTACACATATATCCCACCGAGTAGAGCTCCCCCAATTGGTGCTCACTGCTCGGATAGAAACTTCTATTATAAAATGATTGAAGAATTCCATGATCCTTGGGTTAAGAGGTTGTTTGTGGGATTTGCACGTACTTCTGAATGCAATGGGCCTAGAATGCCAGATTCTCCTCATCATTTAATTGAAGAGATAGATTCTGAACTACCTGTTTCTCAGCCTGCTCTACAGTTAACACACAGTATTTTTGGGTCATCTCCACCTATGCGGAATTTTGACCCAGCAAAGTTGCTCACTGACTCCGGGAAGCTTCAAACACTTGATATATTATTGAAACGCTTACGGGCAGAAAATCATCGTGTTCTCTTGTTTGCTCAGATGACTAAGATGCTGAATATTTTGGAGGACTATATGAACTATAGAAAATATAGGTATTTCAGACTTGATGGGTCATCTACTATTCAGGATCGCAGAGACATGGTCAGAGATTTCCAGAATAGGGCTGATATTTTTGTGTTCTTACTGAGTACGAGAGCTGGTGGACTGGGTATCAACTTGACAGCTGCTGACACAGTTATATTTTATGAGAGTGATTGGAATCCAACACTGGATCTGCAGGCGATGGACAGAGCTCATCGTTTGGGTCAAACAAGAGATGTTACTGTTTACCGACTTATATGTAAAGAGACAGTTGAAGAAAAAATTCTTCTTAGAGCAAGCCAAAAAAGCGCTGTACAGAACCTTGTGATGACTGGGGGTTCTGTTGGTGGTGATCTTTTAGCTCCTGAGGATGTTGTATCTTTGCTTCTAGATGATCCTCAGTTGGAGCAGAAATTAAAAGAAATCCCTCTGCAGGTAAAGGATAAGCAAAAGAAAAAACAACCTGTGAAGGGTATCTGGTTAAATGAAGAAGGTGATGCATCCCTTCAAGATTTAACAAACTCTGTAACCCAGGGTACTGTAGATAATGATCATTCCCTGGACCCAGAGGGATCAAAGTCCGGTAATAAAAAGAGAAAATACGGGTCAGATAAGCAAACTTCGAAGCCAAAGAATTCTCAGAAGATGAGTGAATCCGGTACTACACCTATGGAAGACGAATGGGATGACACTGATGTCCAGAAACCCAAGCGACCAAAGAGAACAAAGAAGAGTGTAAATGAAAAGTTTGAAGAGGTGGTTGCAGTCTCAGAGCGGCCACAAGACCCACCCCCACGAGATTTTGGTGCTGGTGGTTCAAGAGCAGAAACAGACCTAGACACCTAA 4563 0.4217 MDHHRTKSKDSLSYSTLFNLESLMNFQLPEQDGDFDYYGNSSQDESRDSQVGRAIANHSNGNMRGNSLKKRRRSQNSDNEERSSFYGTHMTEERYRSMLGEHIQKYKRRFKDTSSSPAQNHVVAPPLKSSAGLKARKSGNEHRRGLHAAEAVSEWMNGSNSQKLGNHRDSDLMQQCGTNRTIYEPAFLDIGDSITYKIPPIYEKLAAMLNLPSFSDIHVKDFYLKGTLDLGSLAEMMAADKKFGNRNRIGMGETIPLYESLQARLKVMSASNSAHKFSLKVSDAGLNSSIPEGAAGSIKRSILSEGGVLQVYYVKVLEKGDTYEIIERSLPKKQKVKKDPALIEKEEMERIGKIWVNIVRRDIPKHHRNFTGFHRKQLVDAKRVAENCQREVRLKVSRSLKWTRTASIRTRKLARDMLLFWKRIDKEMAEVRKREEKEAAEALRREQELREAKRQQQRLNFLIQQTELYSHFMQNKSNLLSEALPKVDESTNDQDAQIDFSDAGPSEAEDPEEAELKKEALKAAQEAVSKQKMLTSAFDTECLRLRQADDTDLLSPEVAGASNIDLQTPSTMPVASTVRTPELFKGCLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWNEELERFCPELKRLPYWGGVAERSVLRKSINPKDLYRREAKFHVLITSYQLLVTDEKFFRRVKWQYMVLDEAQAIKSSTSIRWKTLLSFNCRNRLLLTGTPIQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIENHAEHGGTLNEHQLNRLHSILKPFMLRRVKKDVISELTTKTEVTVHCKLSSRQQAFYQAIKNKISLAELFDSNRGQLNEKRILNLMNIVIQLRKVCNHPELFERSEGSTYLHFGAIPNSLPPPPFGELEDVYYSGGHNPISYEIPKLVYQEIMQSSETLCSAVGLGVYRESFQKHFNIFRPENVYRSVFSEDMHVKSGSFGFTHLMGLSPQEVTFLATGSFMERLLFSMRLEQKFIDEAVDFLMETIDDDPECSYLEKGKVRTVTRMLLIPSRSETKFLQGRLPTGPSHAPFEALVVSHQDRLLSNARPLHSAYTYIPPSRAPPIGAHCSDRNFYYKMIEEFHDPWVKRLFVGFARTSECNGPRMPDSPHHLIEEIDSELPVSQPALQLTHSIFGSSPPMRNFDPAKLLTDSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYFRLDGSSTIQDRRDMVRDFQNRADIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTRDVTVYRLICKETVEEKILLRASQKSAVQNLVMTGGSVGGDLLAPEDVVSLLLDDPQLEQKLKEIPLQVKDKQKKKQPVKGIWLNEEGDASLQDLTNSVTQGTVDNDHSLDPEGSKSGNKKRKYGSDKQTSKPKNSQKMSESGTTPMEDEWDDTDVQKPKRPKRTKKSVNEKFEEVVAVSERPQDPPPRDFGAGGSRAETDLDT* 1521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g2223 1520 Coils Coil 426 465 - -
Dod01g2223 1520 MobiDBLite consensus disorder prediction 71 89 - -
Dod01g2223 1520 CDD SF2_C_SNF 1193 1325 - -
Dod01g2223 1520 MobiDBLite consensus disorder prediction 56 89 - -
Dod01g2223 1520 Gene3D - 826 895 IPR027417 -
Dod01g2223 1520 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1205 1355 IPR001650 -
Dod01g2223 1520 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 600 771 IPR014001 -
Dod01g2223 1520 SMART helicmild6 1231 1314 IPR001650 -
Dod01g2223 1520 ProSiteProfiles DBINO domain profile. 354 479 IPR020838 GO:0003677
Dod01g2223 1520 Gene3D - 1172 1413 IPR027417 -
Dod01g2223 1520 MobiDBLite consensus disorder prediction 1446 1460 - -
Dod01g2223 1520 MobiDBLite consensus disorder prediction 487 512 - -
Dod01g2223 1520 MobiDBLite consensus disorder prediction 1416 1520 - -
Dod01g2223 1520 SMART ultradead3 584 779 IPR014001 -
Dod01g2223 1520 PANTHER HELICASE SRCAP-RELATED 17 1488 - -
Dod01g2223 1520 PANTHER CHROMATIN-REMODELING ATPASE INO80 17 1488 IPR031047 GO:0005634|GO:0006281|GO:0006338|GO:0006351|GO:0016887|GO:0031011
Dod01g2223 1520 MobiDBLite consensus disorder prediction 1425 1445 - -
Dod01g2223 1520 Pfam Helicase conserved C-terminal domain 1205 1314 IPR001650 -
Dod01g2223 1520 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 818 1381 IPR027417 -
Dod01g2223 1520 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 572 816 IPR027417 -
Dod01g2223 1520 Pfam DNA-binding domain 349 478 IPR020838 GO:0003677
Dod01g2223 1520 Pfam SNF2-related domain 603 890 IPR000330 GO:0005524|GO:0140658
Dod01g2223 1520 Gene3D - 584 825 IPR038718 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g2223 Dod-Chr1 59685593 59698973 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g2223 609 904 RAD5 or RAD16-like Gene Family AT5G43530 28.363 9.61e-26 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Dod01g2223 SNF2_N 1.3e-66 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g2223 K11665 - gmx:100780615 2548.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g2223 01 59685593 59698973 Dod01g2223 01 59685593 59698973 ECH