Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g2215 ATGGAAGTGGATGAGGAAAATGCCCCATCAACCAGTGCTGGTGAATCCTCTACAGCAGCCTCTGATGTTCAAAACCCGGTTTCTTCTGTTCATGCTGCAACTACGCCCATTCCAATTCAACCTATTATTCCACCAGTTATTACTGCTTCTACTGTGCCGCCGCCTATAGCCCCAATTCCCTCCATTCCTCCCGCTGCAGTTGTGCCTCCTATAGCCCCAATTCCCGCCCCTCCGGTTGTTCGCCCTCTGGCTCCACTCCCAGCTCGGCCACCACTTATTAAGCCACCTGTGTCGCAGAATGGTGAGGTTGGATCGAGTGACTCTGATTCAGATAACGATGACTTGGGTGCCAGGATCAATCAGGGTGCTGGGGAGTATGAGATATCGGAAGAGAGTAGGCTGGTGAGAGAGAGGCAGGAGAAGGCGATGCAGGAGCTCATGATGAAGAGGCGTGCCGCCGCACTAGCTGTTCCCACTAATGACATGGCTGTGCGTGCTCGCCTTCGTCGCCTTGGTGAGCCGATAACTCTCTTTGGTGAAAGGGAGATGGAGAGGAGAGACAGGTTGAGGATGATTATGGCTAGGCTGGATGCTGAAGGCCAGCTGGAGAAGCTGATGAAAGCTCATGAGGAGGAAGAGACTGCAGCTTCTGCTGCAAAGGACGAGGAAGATGAAGACATACAGTATCCCTTTTACACTGAAGGGTCAAAGTCCCTCCTGGATGCCAGAATTTATATTGCTAAATATTCTTTGGTTAGGGCAGCATTGCGTCTTCAACGTGCTCGGAGAAGAAGGGATGATCCAGATGAAGATATGGATGCAGAGGTGGATTGGGCACTGAAACAGGCTGCTAATTTTTGTCTTGAGTTCAGTGAAATTGGAGATGATCGACCGCTTTCTGGCTGCTCTTTCTCACGAGATGGAAAATGCCTCGCTACCTGTTCTCTAACTGGAGCTGCCAAGTTGTGGAGCATGCCTAAAGTTACAAAATCTTCTACATTAAAGGGACACACAGAGCGTGCTACTGATGTTGTTTTTTCTCCTGTGCACAACCATTTGGCAACTGCATCTGCTGATCGAACTGCAAAGTATTGGGATGATCAAGGATCTCTATTAATGTCATTTGAGGGACATATTGACCGTCTTGCACGAATTGCTTTCCATCCATCGGGAAAGTACCTGGGCACTGCTAGCTTCGACAAGACATGGAGATTATGGGACATAGAAACAGGAGAGGAGTTGCTTCTTCAAGAGGGTCACAGTAGGAGTGTATATAGTCTAGCTTTCCACCATGATGGATCATTAGCTGCATCTTGTGGACTGGATTCTCTTGCTCGTGTTTGGGATCTCCGAACTGGGAGAAGTATTCTTGCACTGGAAGGTCATGTCAAGCCGGTTCTTGGCATTAGCTTTTCACCTAATGGATACCATTTGGCCACTGGTGGGGAAGACAACACTTGTCGCATATGGGACTTGAGGAAGAAGAAATGCATGTACACCATTCCTGCTCACTCTAATTTGATATCACAAGTTAAATTTGAGCCACAAGAGGGTTACTTTTTGGTAACTGCCTCATATGACATGACAGCTAAGGTTTGGTCCGCCCGTGACTTTAAGCCTGTGAAGACACTATCTGGGCATGAAGCAAAAGTTACGTCTATGGATGTTCTCGGAGATGGAAGTTATATTGCAACCGTCTCCCATGATCGCACCATAAAGTTGTGGTCCAGCAATATGACTAGTGAACAAAGTGCTATGGATGTTGATTAG 1770 0.4791 MEVDEENAPSTSAGESSTAASDVQNPVSSVHAATTPIPIQPIIPPVITASTVPPPIAPIPSIPPAAVVPPIAPIPAPPVVRPLAPLPARPPLIKPPVSQNGEVGSSDSDSDNDDLGARINQGAGEYEISEESRLVRERQEKAMQELMMKRRAAALAVPTNDMAVRARLRRLGEPITLFGEREMERRDRLRMIMARLDAEGQLEKLMKAHEEEETAASAAKDEEDEDIQYPFYTEGSKSLLDARIYIAKYSLVRAALRLQRARRRRDDPDEDMDAEVDWALKQAANFCLEFSEIGDDRPLSGCSFSRDGKCLATCSLTGAAKLWSMPKVTKSSTLKGHTERATDVVFSPVHNHLATASADRTAKYWDDQGSLLMSFEGHIDRLARIAFHPSGKYLGTASFDKTWRLWDIETGEELLLQEGHSRSVYSLAFHHDGSLAASCGLDSLARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKKKCMYTIPAHSNLISQVKFEPQEGYFLVTASYDMTAKVWSARDFKPVKTLSGHEAKVTSMDVLGDGSYIATVSHDRTIKLWSSNMTSEQSAMDVD* 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g2215 589 ProSitePatterns Trp-Asp (WD) repeats signature. 394 408 IPR019775 -
Dod01g2215 589 PANTHER WD40 REPEAT PROTEIN 124 581 - -
Dod01g2215 589 SUPERFAMILY PRP4-like 142 197 IPR036285 -
Dod01g2215 589 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 334 366 - -
Dod01g2215 589 ProSiteProfiles Trp-Asp (WD) repeats profile. 375 416 IPR001680 GO:0005515
Dod01g2215 589 SUPERFAMILY WD40 repeat-like 286 575 IPR036322 GO:0005515
Dod01g2215 589 Pfam pre-mRNA processing factor 4 (PRP4) like 164 190 IPR014906 -
Dod01g2215 589 ProSiteProfiles Trp-Asp (WD) repeats profile. 501 543 IPR001680 GO:0005515
Dod01g2215 589 ProSiteProfiles Trp-Asp (WD) repeats profile. 417 458 IPR001680 GO:0005515
Dod01g2215 589 Coils Coil 195 222 - -
Dod01g2215 589 Gene3D - 135 204 IPR036285 -
Dod01g2215 589 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 501 534 - -
Dod01g2215 589 MobiDBLite consensus disorder prediction 1 32 - -
Dod01g2215 589 ProSiteProfiles Trp-Asp (WD) repeats profile. 334 366 IPR001680 GO:0005515
Dod01g2215 589 CDD WD40 298 576 - -
Dod01g2215 589 Pfam WD domain, G-beta repeat 332 366 IPR001680 GO:0005515
Dod01g2215 589 Pfam WD domain, G-beta repeat 370 407 IPR001680 GO:0005515
Dod01g2215 589 Pfam WD domain, G-beta repeat 496 534 IPR001680 GO:0005515
Dod01g2215 589 Pfam WD domain, G-beta repeat 457 491 IPR001680 GO:0005515
Dod01g2215 589 Pfam WD domain, G-beta repeat 539 576 IPR001680 GO:0005515
Dod01g2215 589 Pfam WD domain, G-beta repeat 418 449 IPR001680 GO:0005515
Dod01g2215 589 ProSiteProfiles Trp-Asp (WD) repeats profile. 544 576 IPR001680 GO:0005515
Dod01g2215 589 PRINTS G protein beta WD-40 repeat signature 394 408 IPR020472 -
Dod01g2215 589 PRINTS G protein beta WD-40 repeat signature 353 367 IPR020472 -
Dod01g2215 589 PRINTS G protein beta WD-40 repeat signature 478 492 IPR020472 -
Dod01g2215 589 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 459 493 - -
Dod01g2215 589 Gene3D - 272 457 IPR015943 GO:0005515
Dod01g2215 589 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 375 412 - -
Dod01g2215 589 ProSiteProfiles Trp-Asp (WD) repeats profile. 459 500 IPR001680 GO:0005515
Dod01g2215 589 MobiDBLite consensus disorder prediction 90 122 - -
Dod01g2215 589 SMART pr04_2 159 212 IPR014906 -
Dod01g2215 589 MobiDBLite consensus disorder prediction 9 32 - -
Dod01g2215 589 ProSitePatterns Trp-Asp (WD) repeats signature. 478 492 IPR019775 -
Dod01g2215 589 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 417 454 - -
Dod01g2215 589 ProSitePatterns Trp-Asp (WD) repeats signature. 436 450 IPR019775 -
Dod01g2215 589 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 544 576 - -
Dod01g2215 589 SMART WD40_4 537 576 IPR001680 GO:0005515
Dod01g2215 589 SMART WD40_4 452 491 IPR001680 GO:0005515
Dod01g2215 589 SMART WD40_4 410 449 IPR001680 GO:0005515
Dod01g2215 589 SMART WD40_4 285 324 IPR001680 GO:0005515
Dod01g2215 589 SMART WD40_4 368 407 IPR001680 GO:0005515
Dod01g2215 589 SMART WD40_4 327 366 IPR001680 GO:0005515
Dod01g2215 589 SMART WD40_4 494 534 IPR001680 GO:0005515
Dod01g2215 589 PANTHER BNAC04G01920D PROTEIN 124 581 - -
Dod01g2215 589 Gene3D - 458 587 IPR015943 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g2215 390 575 U-box Gene Family AT2G33340 24.742 2.34e-12 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g2215 K12662 - gmx:100788948 874.389
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g2215 01 59401720 59410975 Dod01g2215 01 59401720 59410975 ECH