Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g2193 ATGCTTGCATTACCCCCTAATGTGTTCTCTACCATGGCATGGCCCTTAGAGGTTGAGCCTATAAGTCATAGCCAGTTTAACTACTTCACCACCACAGAGTACCCATTTCCACATCAATTCTCTTCATCACCTCATCAATCACAGGTTGAGGTTGAGGTGGTTGAAAGGTCTACACCATCCCCGGACCAAGAAGACCCTACCATGGTCAAGAAGCTCAACCACAACGCTAGTGAACGTGATCGCCGCAAGAGGATCAATACCTTGTATTCATCACTTCGTTCACTCCTCCCTGTGGCAGACCAAACGAAAAAAATGAGCATTCCAACAACAATTTCACGAGTCCTGAAATACATACCTGAGTTACAGCAACAAGTGGAAGGACTAACAAAGAAAAAGGAGGAGCTATTACTGAAAATCTCTCGGCAAAGTGATGCAGTGAACAAAGAACCTCAAAGGAAGATTTCCCAGCACAACTCTGCTTTTGTAGTTTCAACAAGTAGGCTCAGTGATAGTGAGGCTACTATTCAGATTTCCTCATATGAGGGTCACAAGTCTCCACTATCTGAGATCTTGCTGTGTTTAGAAAACTATGGCCTTGCACTGCTGAATGCTTCTTCCTTTGAGACCTTTGCAGGGAGGATCTTCTATAACTTGCATTTCCAGGTGGATAAAACTCACAGATTAGAGTCAGAGATTCTATCTGAGAAGCTTTTGTCAATATATGAGAAGCAGCAAAGGATTTTCTAG 747 0.4324 MLALPPNVFSTMAWPLEVEPISHSQFNYFTTTEYPFPHQFSSSPHQSQVEVEVVERSTPSPDQEDPTMVKKLNHNASERDRRKRINTLYSSLRSLLPVADQTKKMSIPTTISRVLKYIPELQQQVEGLTKKKEELLLKISRQSDAVNKEPQRKISQHNSAFVVSTSRLSDSEATIQISSYEGHKSPLSEILLCLENYGLALLNASSFETFAGRIFYNLHFQVDKTHRLESEILSEKLLSIYEKQQRIF* 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g2193 248 Pfam Helix-loop-helix DNA-binding domain 70 122 IPR011598 GO:0046983
Dod01g2193 248 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 70 139 IPR036638 GO:0046983
Dod01g2193 248 Gene3D - 62 155 IPR036638 GO:0046983
Dod01g2193 248 MobiDBLite consensus disorder prediction 52 80 - -
Dod01g2193 248 Coils Coil 118 138 - -
Dod01g2193 248 CDD bHLH_AtORG2_like 70 144 - -
Dod01g2193 248 PANTHER TRANSCRIPTION FACTOR ORG2-RELATED 1 243 - -
Dod01g2193 248 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 1 243 IPR015660 GO:0003700|GO:0006357
Dod01g2193 248 SMART finulus 75 127 IPR011598 GO:0046983
Dod01g2193 248 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 69 121 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g2193 Dod-Chr1 59044000 59046654 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g2193 1 248 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G56970 42.188 5.35e-60 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dod01g2193 HLH 1.1e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g2193 - - gmx:100803424 299.286