Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g2175 ATGTCCCTTGAAGACTCTCTAAGATCTCTATCCCTGGATTACCTGAACCTCCTCATCAACGGCCAAGCCTTCAGCGACGTCACTTTCAGCGTGGAGGGCCGCCTCGTCCACGCGCACCGCTGCATCCTCGCCGCCCGCAGCCTCTTCTTCAGGAAATTCTTCTGCGGGCCTGACCCGCCTCCCTCGGGCCTGGACCCGGGTCCAGGCCTGAGGGTCAACTCTGGCTCCGGTAGCGGAGCCAGAACGTCCGGTGTGATACCGGTGAACTCGGTCGGGTACGAGGTGTTCCTGCTGATGCTGCAGTTCCTGTACAGCGGGCAGGTCTCCATCGTGCCCCAGAAGCACGAACCCAGGCCCAATTGCGGGGAGAGAGGCTGCTGGCACACGCATTGCTCCTCAGCCGTTGATCTCGCCCTTGACACCCTCGCTGCCGCTAGATACTTTGGCGTTGAACAGCTTGCATTGCTTACTCAGAAACAACTAGCGAGCATGGTGGAAAAAGCCTCGATTGAAGATGTAATGAAAGTACTCTTAGCTTCCAGAAAGCAAGACATGCACCAACTATGGACCACTTGCTCCCACCTCGTAGCAAAGTCAGGCCTCCCACCAGAGGTACTAGCCAAGCACCTCCCCATCGACATAGTCGCCAAGATCGAAGAGCTCCGCCTCAAATCCTCCCTCGCACGCCGCACTCTCCTCCCCCACCACCACCACCACCACCACCACCCCCACCACCCTCACCTCCACCACCACGAACTCTCTGCCGCCGCAGACCTCGAGGACCAGAAAATCCGGCGAATGAGGAGGGCCCTTGACTCCTCCGACGTGGAGCTAGTCAAGCTCATGGTCATGGGAGAAGGCCTCAACCTCGATGAGGCGCTCGCCTTGCACTACGCAGTGGAGAATTGCAGCAGAGAAGTGGTGAAGGCCCTGCTGGAACTCGGCGCAGCAGATGTTAACTACCCTGCTGGTCCAGCAGGGAAAACGCCACTTCATATAGCGGCGGAGATGATCTCGCCGGATATGGTGGCTGTCCTGCTGGACCACCATGCGGATCCTAATGTAAGGACCATGGACAATGTCACGCCTTTGGACACACTCCGAACCCTAACCTCGGACTTCCTCTTCAAAGGCGCTGTCCCTGGACTCACCCACATTGAGCCAAACAAGTTGAGGCTTTGCTTGGAGCTTGTTCAATCCGCGGCACTCGTGTTGTCACGTGAAGAAGGCAATGCAAATGCCAATGCCAATAACAACAACAATGTTGCTTCGTCAACAACGCACATTTACCCTCCTCCCATGAACGAAGATCATCATAGCAGTTCAAACAGCGGCAACAACAACAACAGCAACAGCAACATGGGCAGTAACCTTAACTTGGACTCCAGGTTGGTGTATCTTAACCTTGGTGCCACGGTTGGTGGTTCGGGTCATATGAGTTCAAGGTTGGATGGTGGTGGTGATGATGATAACCGTCATGGTCATGAACCAGCGATGTACCACCACTCTCATCATGACTTCTAG 1524 0.5584 MSLEDSLRSLSLDYLNLLINGQAFSDVTFSVEGRLVHAHRCILAARSLFFRKFFCGPDPPPSGLDPGPGLRVNSGSGSGARTSGVIPVNSVGYEVFLLMLQFLYSGQVSIVPQKHEPRPNCGERGCWHTHCSSAVDLALDTLAAARYFGVEQLALLTQKQLASMVEKASIEDVMKVLLASRKQDMHQLWTTCSHLVAKSGLPPEVLAKHLPIDIVAKIEELRLKSSLARRTLLPHHHHHHHHPHHPHLHHHELSAAADLEDQKIRRMRRALDSSDVELVKLMVMGEGLNLDEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMISPDMVAVLLDHHADPNVRTMDNVTPLDTLRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVLSREEGNANANANNNNNVASSTTHIYPPPMNEDHHSSSNSGNNNNSNSNMGSNLNLDSRLVYLNLGATVGGSGHMSSRLDGGGDDDNRHGHEPAMYHHSHHDF* 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g2175 507 MobiDBLite consensus disorder prediction 477 507 - -
Dod01g2175 507 Gene3D Potassium Channel Kv1.1; Chain A 4 198 IPR011333 -
Dod01g2175 507 SMART ANK_2a 291 321 IPR002110 GO:0005515
Dod01g2175 507 SMART ANK_2a 326 355 IPR002110 GO:0005515
Dod01g2175 507 CDD BTB_POZ_NPR_plant 8 165 - -
Dod01g2175 507 Pfam Ankyrin repeats (3 copies) 274 356 IPR002110 GO:0005515
Dod01g2175 507 MobiDBLite consensus disorder prediction 483 507 - -
Dod01g2175 507 Gene3D - 252 374 IPR036770 -
Dod01g2175 507 ProSiteProfiles Ankyrin repeat profile. 326 358 IPR002110 GO:0005515
Dod01g2175 507 MobiDBLite consensus disorder prediction 412 457 - -
Dod01g2175 507 ProSiteProfiles BTB domain profile. 25 112 IPR000210 GO:0005515
Dod01g2175 507 Pfam Domain of unknown function (DUF3420) 200 268 IPR024228 -
Dod01g2175 507 ProSiteProfiles Ankyrin repeat region circular profile. 326 356 - -
Dod01g2175 507 PANTHER BTB/POZ DOMAIN AND ANKYRIN REPEAT-CONTAINING PROTEIN NH5.2 1 505 IPR044284 GO:0099402
Dod01g2175 507 PANTHER REGULATORY PROTEIN NPR5 1 505 - -
Dod01g2175 507 SMART BTB_4 25 165 IPR000210 GO:0005515
Dod01g2175 507 Pfam BTB/POZ domain 16 115 IPR000210 GO:0005515
Dod01g2175 507 SUPERFAMILY Ankyrin repeat 285 368 IPR036770 -
Dod01g2175 507 SUPERFAMILY POZ domain 8 163 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g2175 Dod-Chr1 58790227 58794378 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Dod01g2175 BTB 2.5e-14 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g2175 K14508 - qsu:112012060 724.161
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g2175 01 58790227 58794378 Dod07g1164 07 29210052 29214146 PCT