Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g2149 ATGCAGCAGCACCATCATCACACCGCCATGGACAACACTGATCTGTTCCAATTCCTTGCGGCAGGAGGCACCGACAACAGCGCCTCCTTCTTCAGTACTGCTGCACCACCGTACGGCTCGGTAGCAGAGGCAACAGCATCATCGATGATGATGATGATGATGCAGCACAGCAGCTTCTCCAGTTCCTCCAGTTATTACCCCTTGGAGTTGTCAGAAATTACGGATAATAATAATAATAATAATAATCATAGTAATAACGCACCCTCACAGCGAGATAGAGCACTCGCTGCCATGAGGAACCATAAGGAAGCTGAGAAGAGAAGGAGGGAGAGAATCAATTCCCACCTCGCTCGCCTTCGCACTCTTCTCCCTTGCAATTCCAAGACAGATAAGGCTTCACTTCTTGCAAAGGTTGTTCAGAGAGTGAAGGAGCTAAAAGAGCAAACATCCGAAATCACCGACCTCGAAACCGTTCCGTCGGAGACCGACGAGATCACCGTCCTCTCCTCCGGCGGCGGAGATTACGGCGGCGACGGGAGGCTTATATTCAAGGCCTCGCTGTGCTGCGAGGACCGCTCGGACCTGATCCCTGAGCTGATCGAGATCCTGAATTCGCTTCACCTGAAAACGCTGAGAGCGGAAATGGCAACGCTCGGCGGAAGAACGCGCAACGTTCTGGTGGTTGCCGCCGAGAAGGAGCACAGCATCGAGTCCATCCACTTCCTTCAGAACTCGCTCAAGTCTGTGATAGAACGCTCCAACTCCTCCAGCGACAGGTCGAAACGGCGTCGTGGCCTCGACCGAAGATTCACTGCTTGA 819 0.5299 MQQHHHHTAMDNTDLFQFLAAGGTDNSASFFSTAAPPYGSVAEATASSMMMMMMQHSSFSSSSSYYPLELSEITDNNNNNNNHSNNAPSQRDRALAAMRNHKEAEKRRRERINSHLARLRTLLPCNSKTDKASLLAKVVQRVKELKEQTSEITDLETVPSETDEITVLSSGGGDYGGDGRLIFKASLCCEDRSDLIPELIEILNSLHLKTLRAEMATLGGRTRNVLVVAAEKEHSIESIHFLQNSLKSVIERSNSSSDRSKRRRGLDRRFTA* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g2149 272 MobiDBLite consensus disorder prediction 72 93 - -
Dod01g2149 272 MobiDBLite consensus disorder prediction 254 272 - -
Dod01g2149 272 Pfam Helix-loop-helix DNA-binding domain 100 145 IPR011598 GO:0046983
Dod01g2149 272 Gene3D - 91 156 IPR036638 GO:0046983
Dod01g2149 272 PANTHER TRANSCRIPTION FACTOR BHLH30 49 270 IPR045847 GO:0003700|GO:0006355
Dod01g2149 272 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 96 145 IPR011598 GO:0046983
Dod01g2149 272 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 100 155 IPR036638 GO:0046983
Dod01g2149 272 PANTHER TRANSCRIPTION FACTOR BHLH106-RELATED 49 270 - -
Dod01g2149 272 MobiDBLite consensus disorder prediction 72 91 - -
Dod01g2149 272 MobiDBLite consensus disorder prediction 253 272 - -
Dod01g2149 272 CDD bHLH_AtAIG1_like 92 167 - -
Dod01g2149 272 SMART finulus 102 151 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g2149 Dod-Chr1 58306270 58307577 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g2149 65 256 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G41130 65.128 7.76e-77 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dod01g2149 HLH 2.8e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g2149 - K22484 gmx:100802566 321.627