Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g2140 ATGGACAACGACGCCACCGAGCCGCAAAACCCGGGCGCCTCGGAGGAGCCCCTCCTGTTGGGCTTCATCACCGCCAACATCGTGGGCCTGAGGCACTACCCGGGCACCCTCAGCGGCCGCGAGATGGTGGGCCTCGTCCGCGAACCCCTCAACCCCTACGACCCAAACGCCATCAAGGTCCTCAACACCCGCTCCCTCCAAGTCGGCCACATCGAGCGCCACGTCGCCGCCGTCCTCTCCCCCTTAATCGACTCCGAACTCATCCTCGTCGAAGCCATCGTCCCTAACCCCCGCTCCAAATCCAACCGCTTCCGTCTCCCCTGCCAGCTACACATCTTCACCCCTATCCACTCCTTCCCCACCGTCCGCGAAATCATCCTCAGCTCCAACATCCACCTCGTCTCCGAAAACGACCCGTCGTTTACTCTCTCCGAGTCCCAGGCTGTCAAAGAAACCAAAGCCGAGAAAAGGTACAAGAGCGTCGACGAGATCTTCAGGCTCGTCGACGAGAGCTTGCTCAGCAAGGAGCGTTCCAACCACGCGCTTGAGCCTCCGCGTGATGTCATCAAGTCGGAGCTGCTCCTTCACCAGAAGGAGGGCTTGGGATGGCTTGTGAACAGAGAGTGTTCCAACGAGTTGCCGCCGTTTTGGGAAGAGAGGGAAGAAGGTGAATTCGTGAATATCTTGACGAATTACAAAACCGACAACAGGCCTGAGCCTCTACGAGGAGGGATTCTTGCCGATGCTATGGGGTTGGGGAAGACTCTGACACTGCTATCTTTGATTGCGATTGACAGAGGTTGTGGTTGTGGGAGCGGGGATGTTGAAAAGAAGAGTGGAAAGAAAGGTTCTGTTTTGCGAAAGAGGAGAAAGATTATGAGCGATTGTAATGGCTCTGATGATTCGTTTTTTTATGCTGGGTTGGAGACCAATGCCACATTGGTTGTGTGCCCTCCTTCTGTGTTCTCGACCTGGATAACACAGCTGGAGGAGCACACTGTTCCGGGATCTTTGAGGACTTATATGTATTATGGTGATAAGAGGACAAGGGATGCTGATGAGCTCAAGAAGAATGATTTGGTGTTGACTACTTATACCACATTGTCGACTGAGGAGAATCTGGTTGAGACGCCGGTGAAGAAGCTCGAGTGGAGGAGGATTATCTTGGATGAGGCTCATACTATCAAGAATTTCAATGCTCAGCAGAGTAAGGCTGTTATCGGGTTGAATGCCAAGAGGAGGTGGGCTGTCACGGGGACGCCGATTCAAAACGGTTCGCTGGATTTGTTCTCTTTGATGGCGTTCTTGCATTTTGAGCCGTTTTCGATTAGGAGCTACTGGCGAAGCTTGGTGCAACGGCCTCTTAATCAGGGCCTGGAAAGAGGGCTAGTCGCGGTTGCAGGTATATAG 1410 0.5369 MDNDATEPQNPGASEEPLLLGFITANIVGLRHYPGTLSGREMVGLVREPLNPYDPNAIKVLNTRSLQVGHIERHVAAVLSPLIDSELILVEAIVPNPRSKSNRFRLPCQLHIFTPIHSFPTVREIILSSNIHLVSENDPSFTLSESQAVKETKAEKRYKSVDEIFRLVDESLLSKERSNHALEPPRDVIKSELLLHQKEGLGWLVNRECSNELPPFWEEREEGEFVNILTNYKTDNRPEPLRGGILADAMGLGKTLTLLSLIAIDRGCGCGSGDVEKKSGKKGSVLRKRRKIMSDCNGSDDSFFYAGLETNATLVVCPPSVFSTWITQLEEHTVPGSLRTYMYYGDKRTRDADELKKNDLVLTTYTTLSTEENLVETPVKKLEWRRIILDEAHTIKNFNAQQSKAVIGLNAKRRWAVTGTPIQNGSLDLFSLMAFLHFEPFSIRSYWRSLVQRPLNQGLERGLVAVAGI* 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g2140 469 Gene3D - 165 465 IPR038718 -
Dod01g2140 469 Gene3D - 13 133 - -
Dod01g2140 469 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 299 464 - -
Dod01g2140 469 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 14 265 - -
Dod01g2140 469 Pfam HIRAN domain 21 115 IPR014905 GO:0003676|GO:0008270|GO:0016818
Dod01g2140 469 SMART HIRAN_2 20 116 IPR014905 GO:0003676|GO:0008270|GO:0016818
Dod01g2140 469 Pfam SNF2-related domain 196 458 IPR000330 GO:0005524|GO:0140658
Dod01g2140 469 SMART ultradead3 189 453 IPR014001 -
Dod01g2140 469 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 235 439 IPR014001 -
Dod01g2140 469 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 160 459 IPR027417 -
Dod01g2140 469 PANTHER HELICASE-LIKE TRANSCRIPTION FACTOR 299 464 - -
Dod01g2140 469 PANTHER HELICASE-LIKE TRANSCRIPTION FACTOR 14 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g2140 Dod-Chr1 58153072 58154481 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g2140 4 463 RAD5 or RAD16-like Gene Family AT5G05130 58.542 0.0 545
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Dod01g2140 SNF2_N 1.3e-56 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g2140 K15711 - cit:102608925 575.474