Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g2139 ATGGCTGCAATTTCGTTACGTAGAACAAAAGACAAGGGACTGGCAGGGCTGCCACCGAAAACCATAGAGACCCATTTCGTTGAACTTTGTTCGGAAGAACGTGAATTGTATGATAAGGTGAATGAGGACTCAAGGAACACAATATTGAGTTATATCAGAAATGAAAGAATAGTGCGCCATTATTCTAGGGTACTAAGTATGATTTTACGACTTCGCCAAATCTGTACCGATATGGCATTGTGCCCTAAAGATCTTGCGTCCGTTTTCCCTTCAGATAATATTGAAGACGTTTCAAATAACCCGGAGTTGCTGCAAAAGTTGGTTGAGATGCTGCAGGGTGGCGAAGATTTTGAGTGTCCAATTTGTATATCTCCTTCAATGGAGATTGTTATTACATGCTGTGCTCACATTTTCTGCCGCCCCTGCATTCTGAAAACTCTACAGTGCAGCCATTCCCGCTGTCCTCTTTGCCGTCGATCCCTCTCAGAATCTGACTTGTTCTCCGCCCCTCGGGAGTCTTCCATGGCAGATAGTCCTGGACCATCCTCATATTCAAAGACAAGGTTATCTTCCAAATCGTCTGCTTTGATAAAACTTCTTGTAGAATCCAGGGATCAAGACCCGGCTGCAAAATCGGTTGTGTTTTCACAATTTCGCCAAATGTTATTATTGCTCGAAGAGCCCCTGAAAGAAGCTGGTTTCAAGACTCTGCGCCTTGATGGTTCAATGAGTGCTAAACAAAGGGCTCAAGTCATCGACCAATTTCAAAGCGGTGGAAGAGATGGGCCGACGGTTCTGCTTGCAAGCCTTAGGGCTTCAGGTCAAGGTATAAATCTTACAGCTGCCTCTAGGGTGTACTTTATGGAGCCTTGGTGGAACCCTGCTGTCGAGGAACAGGCAATGGATCGCGTTCACCGCATTGGACAGAAAGAGGCAGTGAAGATTGTCAGATTCATCGCTCAAAACAGCATTGAAGAGAAGATATTGATGTTGCAGGAGAAGAAGAAGGAGCTAGCAAGGGAAACATTTGGAAGGGGATCAAAGGATGTTGGCATGGGCTTCGATGACCTACGTTTCCTTATGTCCATATGA 1092 0.4524 MAAISLRRTKDKGLAGLPPKTIETHFVELCSEERELYDKVNEDSRNTILSYIRNERIVRHYSRVLSMILRLRQICTDMALCPKDLASVFPSDNIEDVSNNPELLQKLVEMLQGGEDFECPICISPSMEIVITCCAHIFCRPCILKTLQCSHSRCPLCRRSLSESDLFSAPRESSMADSPGPSSYSKTRLSSKSSALIKLLVESRDQDPAAKSVVFSQFRQMLLLLEEPLKEAGFKTLRLDGSMSAKQRAQVIDQFQSGGRDGPTVLLASLRASGQGINLTAASRVYFMEPWWNPAVEEQAMDRVHRIGQKEAVKIVRFIAQNSIEEKILMLQEKKKELARETFGRGSKDVGMGFDDLRFLMSI* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g2139 363 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 100 174 IPR013083 -
Dod01g2139 363 CDD SF2_C_SNF 189 319 - -
Dod01g2139 363 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 195 358 IPR001650 -
Dod01g2139 363 Gene3D - 18 357 IPR027417 -
Dod01g2139 363 SMART ring_2 119 157 IPR001841 -
Dod01g2139 363 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 356 IPR027417 -
Dod01g2139 363 ProSiteProfiles Zinc finger RING-type profile. 119 158 IPR001841 -
Dod01g2139 363 PANTHER HELICASE-LIKE TRANSCRIPTION FACTOR 1 347 - -
Dod01g2139 363 MobiDBLite consensus disorder prediction 168 187 - -
Dod01g2139 363 ProSitePatterns Zinc finger RING-type signature. 134 143 IPR017907 -
Dod01g2139 363 Pfam SNF2-related domain 4 78 IPR000330 GO:0005524|GO:0140658
Dod01g2139 363 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 1 347 - -
Dod01g2139 363 SMART helicmild6 223 308 IPR001650 -
Dod01g2139 363 Coils Coil 321 341 - -
Dod01g2139 363 SUPERFAMILY RING/U-box 115 167 - -
Dod01g2139 363 Pfam Helicase conserved C-terminal domain 192 308 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g2139 Dod-Chr1 58149919 58152694 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g2139 1 363 RAD5 or RAD16-like Gene Family AT5G05130 59.178 5.79e-144 427
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Dod01g2139 Helicase_C 2.4e-16 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g2139 K15711 - zju:107431543 484.567