Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g2136 ATGAAGTCACTGGATCATTGGAGGAGTTACTTCAGGTCTGCGAATTCCGACATATTCGACATAATTGACCATGCGATCATGGTGGCCGCTTCCGATTGTCCTAAGGAGTTCAGGCTGAGGAGGGACGGGATTGCCGAGAGGCTGTTCTCTTGCAGGCTCACTAGGTGCCTGGGGTGTGACAGGGTGCAGCTTGCTGTGTCTGGTGATGGTGGTGATGATGGTGGCTGTGGTGGTGGTGGTGATGATGATGATGGTGATAATAGGGATGGTGCTGAGCTTGAAGCTGGGGCAAGCAAGGAGAGCAAGGTCAACAGCTACAGGGATGATGATCATGGCGGCATTGATGTAAATAGGATCAGCAATTACAGCTTTGGGGATGCTGAGGCATTGACTGATGAGATTGAAGAGGAGTCTCAGTTTGTTGGGGAGGTCTTGAGGATCAGAGACATTCTTCATAACGGTGTAGAAGAGTCTGATGCCGTGTTGTTTGAGTCATTGAGGAGGCTCCAGCTGATGGAACTCACTGTGGACTGTCTCAAGGCAACTGAGATTGGAAAGGCGGTTAATCCTCTCCGAAAGCATGGATCAAACGATATTCGTCAACTCGCACGGGCTCTCATCAATGACTGGAAAGAAATGGTAGATGAATGGGTCAAGGCTACCACTACCACAGCTACAGCAGGATCAGAAGGCACTCCAGATTCAGTAAACCCATCTGTTGTTGATGAAGAGGAAGGACTTCCATCACCTCCTATGGATGAAGGGGCCTTCTTTGTAGCCCCAACTGGTTCAATAGAACTCTCACAGTTCTTCGATGGCATGGATGATGATGGAAATCCTCGACAGAGTGGGCAATTCAACAAGAACCGTGAAAATGGCAGAAAGCCATCTATGGACAGTCAAAATATAGAAAAGAGGAAATTGCAGACTTCCAATGAGACAAACATTACTGCCAAGGATAGTAAGAGTCAGCCAGTAAGGAAAAACGAGGCTGCCGTTAGGCTAAATAAACCAATACCTTCTGATTCTGGCCCTGGGAGACCACCAAAATCAAGCATGCAGCGAAAAAGCAATGTGGAGCCAAAGATGCAACAAAAAATGGAGAATAGTACAATCACAAGGAGGCCTCCCATTGGCCAGCAAGATAAATCCAAGTGCTCTGATGATGCTGCAGTCCAAGTGAAGCTAGAAGCCACTAAGAGGAAACTTCAGGAGCGTTACCAACAAGCCGAAAATGCTAAGAGGCAGCGGACAATACAAGTTATGGAATTGAATGATCTCCCCAAGCAAGCAGTCGTCAACCGAAATCCGCATTTCAAACCCGGAAATCACAATAGGTACAGGGGTCATGCGCGAAGATAG 1362 0.4765 MKSLDHWRSYFRSANSDIFDIIDHAIMVAASDCPKEFRLRRDGIAERLFSCRLTRCLGCDRVQLAVSGDGGDDGGCGGGGDDDDGDNRDGAELEAGASKESKVNSYRDDDHGGIDVNRISNYSFGDAEALTDEIEEESQFVGEVLRIRDILHNGVEESDAVLFESLRRLQLMELTVDCLKATEIGKAVNPLRKHGSNDIRQLARALINDWKEMVDEWVKATTTTATAGSEGTPDSVNPSVVDEEEGLPSPPMDEGAFFVAPTGSIELSQFFDGMDDDGNPRQSGQFNKNRENGRKPSMDSQNIEKRKLQTSNETNITAKDSKSQPVRKNEAAVRLNKPIPSDSGPGRPPKSSMQRKSNVEPKMQQKMENSTITRRPPIGQQDKSKCSDDAAVQVKLEATKRKLQERYQQAENAKRQRTIQVMELNDLPKQAVVNRNPHFKPGNHNRYRGHARR* 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g2136 453 CDD TFIIS_I 143 215 - -
Dod01g2136 453 Pfam TFIIS helical bundle-like domain 166 214 IPR017923 -
Dod01g2136 453 MobiDBLite consensus disorder prediction 223 257 - -
Dod01g2136 453 MobiDBLite consensus disorder prediction 303 322 - -
Dod01g2136 453 SMART TFS2_5 141 216 IPR003617 GO:0005634
Dod01g2136 453 ProSiteProfiles TFIIS N-terminal domain profile. 142 217 IPR017923 -
Dod01g2136 453 MobiDBLite consensus disorder prediction 269 390 - -
Dod01g2136 453 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 133 229 IPR035441 -
Dod01g2136 453 Coils Coil 393 420 - -
Dod01g2136 453 MobiDBLite consensus disorder prediction 347 380 - -
Dod01g2136 453 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26A-RELATED 3 451 - -
Dod01g2136 453 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26A-RELATED 3 451 IPR044805 -
Dod01g2136 453 MobiDBLite consensus disorder prediction 90 109 - -
Dod01g2136 453 MobiDBLite consensus disorder prediction 430 453 - -
Dod01g2136 453 MobiDBLite consensus disorder prediction 70 109 - -
Dod01g2136 453 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 140 225 IPR035441 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g2136 Dod-Chr1 58065058 58068563 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Dod01g2136 Med26 5.7e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g2136 - - gmx:100775579 640.188