Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g2128 ATGAGGGAAGAAGATTCAAACTGGTTCTCTCGATGGGATAAGGAACTCCCCCCCCTCCGAGATCTCATGCCCTTATCCCAAACCCTAATCACCCCCGATCTCGCCATCGCCTTCGACATACCTAGCCCTCACACACCCGCCGCCGCCGCCACCGCCACCGCCACCACCACCCCAACAACTCCTCAACCCCACCACCACCTCCAACCGCCGCAACCACAACCACCACCCTCCTCCAACCCTTCCCCCTCCCAACAACAACCTTCCTCCGGCGGCGACTTCGCCGACTCCGGCGATCTCGGCTCTGGCGGCGCCGGCGAGGAGCCCGCCCGAACCCTCAAGCGGCCCCGCCTCGTGTGGACCCCGCAGCTCCACAAGCGCTTCGTCGACGCCGTCGCGCACCTCGGAATCAAGAACGCCGTTCCGAAGACCATAATGCAGCTCATGAGCGTCGACGGTTTGACCCGAGAAAACGTTGCCAGCCACCTCCAGAAGTACCGCCTCTACCTCAAGCGCATGCAGGGGCTCTCCGCAGCAGGTGCCGGCGGTGCCGGCGGGGGAGCTGGTGGTGCCGCCGATGCTGCCACCGATCACCTCTTCGCCAGCTCGCCTGTACCGGCGCACTTCCTTCACCCAGCTGCCGCGGCTGCCGGGAGGCCTAATTCGGAACATTTCCTGCCGTTTGTGCCGGTTCCGGCGATCCACCACCACCATCACCAGCACCAGCACCAGCAGCAGATGGCGGCAGCTGCGGTTGCTGGCGCCGCGGCGTTGCAGCTGCAGCCACAGTATCATCGGCAGGCGGCCGCGGCGGGGCATTTCGGCTCGCCGCCGAATGGGCACTTTGAGCATCCTTTCATGTCCAGGCAGCAGCAGCAGCAGCAACAGCAGATTCATAGGATGGGGGGACCTGTTGGTGGATATGTTGAGGACATGGAATCTGCTAATGCATCTGGTGGGAGGAAGGTTCTTACTCTTTTTCCAACTGGAGATGATTGA 996 0.6305 MREEDSNWFSRWDKELPPLRDLMPLSQTLITPDLAIAFDIPSPHTPAAAATATATTTPTTPQPHHHLQPPQPQPPPSSNPSPSQQQPSSGGDFADSGDLGSGGAGEEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGLSAAGAGGAGGGAGGAADAATDHLFASSPVPAHFLHPAAAAAGRPNSEHFLPFVPVPAIHHHHHQHQHQQQMAAAAVAGAAALQLQPQYHRQAAAAGHFGSPPNGHFEHPFMSRQQQQQQQQIHRMGGPVGGYVEDMESANASGGRKVLTLFPTGDD* 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g2128 331 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 1 331 IPR044841 GO:0003700|GO:0006355
Dod01g2128 331 SUPERFAMILY Homeodomain-like 111 171 IPR009057 -
Dod01g2128 331 PANTHER HOMEODOMAIN-LIKE PROTEIN-RELATED 1 331 - -
Dod01g2128 331 Gene3D - 111 173 - -
Dod01g2128 331 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 115 167 IPR006447 GO:0003677
Dod01g2128 331 MobiDBLite consensus disorder prediction 284 299 - -
Dod01g2128 331 MobiDBLite consensus disorder prediction 1 23 - -
Dod01g2128 331 MobiDBLite consensus disorder prediction 1 18 - -
Dod01g2128 331 MobiDBLite consensus disorder prediction 48 62 - -
Dod01g2128 331 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 119 170 IPR017930 -
Dod01g2128 331 MobiDBLite consensus disorder prediction 266 306 - -
Dod01g2128 331 MobiDBLite consensus disorder prediction 63 82 - -
Dod01g2128 331 Pfam Myb-like DNA-binding domain 118 166 IPR001005 -
Dod01g2128 331 MobiDBLite consensus disorder prediction 39 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g2128 Dod-Chr1 57947760 57950293 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g2128 1 331 G2-like Transcription Factor Family AT3G10760 56.284 6.73e-98 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Dod01g2128 Myb_DNA-binding 2.6e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g2128 - - aip:107623693 368.622