Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g2116 ATGGCATCATCTCATCTCATCCACTCTCTTGAGAATGAACTGAAAGCTCATCAACACTCAGAACTCCCACTCTTGCTAATTGGAAATGAAGGCCTCACAAAACGGATCATCAGAAAAGGACTCACTTGGCAAACTCCATTCTTTGGAGATGAAGTCGAAGTTCATTTCAGAGGACAAGTTGAAAACGGAGCATCTCTTGAATCCAGTTATGATAAAGGGTCCTCGTTTCGTTTCAAATTAGGCCAAGGTGAAGTTATCAAAGGGTGGGATGAAGGAGTTGCCACCATGAAGAAAGGAGAGAGAGCAATGTTCAAAATCCCACCCAAATTGGCATACGGGGAAGTAGGCTCTCCGCCACTGGTTCCTCCCAATGCAACTCTCATTTTTGACATTGAATTGGTGACTTGGAATACCATCAGAGACTTGACTGGCGATGGAGGGATCACGAAAAAAATAATTCGAGAGGGAGAAGGATGGGCTACTCCAAAAGAGGCTGATGAGGTGCTAGTGAAATATGAAGCAAGGCTAGAGAATGGAATGCTTGTGTCTAAGTCCGATCAAGGTGTGGAGTTTAATGTAAGTGATGGCCATCTTTGTCCTGCTATGAGTATAGCAATAAAGACAATGAGAAAGGGTGAGGTGGCACAGCTAACTACCAAATTCTTTTACGGGCTTACTAAAAATTCAATCGGAAACACTGAGCTTGATGGCGGTATCCAACTAGAGCCTAATATAACTACCATCAAACTTGAGCTGCTATCGTGGAATATTGTTACTGATGTCACGGGGGATAGGAAAATATTGAAAAAAATTAAGAAAGTTGGTGACGGGTTTGATCGTCCTAATGAAGGATCTCAAGTGAAAGTGATATATTTGTGTAAACGAGAAGATGGTACAGTTGTTGAGAGGAAAGGATCAGAGGAAGAACCTCATGAGTTCACAACTCAGGAAGAACAGATACCTGAGGGTCTAGAAAGAGCAATTATGACGATGAAGAAATCAGAACAAGCAGTGGTGACTATCAGTGCTGAATACTTGCGTGACCATAATTTACAGGGAAACACAGCCAATAATAACGTCCTCTACTATGAAGTTGAATTGGTTGATTTCGTTAAGGAGAAGCCATTTTGGAAAATGGACACCCAAGAGAAATTAGAAGTTTGTGAGAGGAAGAAGCATGATGGAAATATGCTGTTCAAGGCTAAAAGTTTCAAGCGTGCATCCAAGAAATATGAAAAGGCTGTAAAATGCATCGAGTTTGATCACTCATTCAGTGATGATGAGAAGCGTCATGCAAATACCTTGCGAATATCCTGTAATTTGAACGATGCTGCATGTAAACTAAAATTGGGGGAGTACAATGAAGCTTCCAGACTATGCACAAAGGTCTTAGAACAAGACCCTTTAAATGTCAAGGCTCTTTACAGAAGATGCCAAGCATACCTAAAAACATCAGATTTGGAGAAAGCTGAGGCTGACATAAAAAAAGCTCTGATTATTGATCCAAATAACAGAGATATTAAACTTGAGTACAAGGAGCTGAAACTCAAGCAGAAGGAATACAGTAGATATGAAGCTGACATCTTCAGCACAATGGTTTCAAAGATGGCTAGTTAG 1617 0.4082 MASSHLIHSLENELKAHQHSELPLLLIGNEGLTKRIIRKGLTWQTPFFGDEVEVHFRGQVENGASLESSYDKGSSFRFKLGQGEVIKGWDEGVATMKKGERAMFKIPPKLAYGEVGSPPLVPPNATLIFDIELVTWNTIRDLTGDGGITKKIIREGEGWATPKEADEVLVKYEARLENGMLVSKSDQGVEFNVSDGHLCPAMSIAIKTMRKGEVAQLTTKFFYGLTKNSIGNTELDGGIQLEPNITTIKLELLSWNIVTDVTGDRKILKKIKKVGDGFDRPNEGSQVKVIYLCKREDGTVVERKGSEEEPHEFTTQEEQIPEGLERAIMTMKKSEQAVVTISAEYLRDHNLQGNTANNNVLYYEVELVDFVKEKPFWKMDTQEKLEVCERKKHDGNMLFKAKSFKRASKKYEKAVKCIEFDHSFSDDEKRHANTLRISCNLNDAACKLKLGEYNEASRLCTKVLEQDPLNVKALYRRCQAYLKTSDLEKAEADIKKALIIDPNNRDIKLEYKELKLKQKEYSRYEADIFSTMVSKMAS* 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g2116 538 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 284 371 IPR001179 GO:0003755
Dod01g2116 538 SUPERFAMILY TPR-like 379 532 IPR011990 GO:0005515
Dod01g2116 538 ProSiteProfiles TPR repeat profile. 471 504 IPR019734 GO:0005515
Dod01g2116 538 Gene3D - 27 139 IPR046357 GO:0003755
Dod01g2116 538 Gene3D - 257 373 IPR046357 GO:0003755
Dod01g2116 538 PANTHER PEPTIDYLPROLYL ISOMERASE 248 358 - -
Dod01g2116 538 Pfam Tetratricopeptide repeat 471 504 IPR001440 GO:0005515
Dod01g2116 538 SUPERFAMILY FKBP-like 257 390 - -
Dod01g2116 538 Gene3D Tetratricopeptide repeat domain 374 531 IPR011990 GO:0005515
Dod01g2116 538 PANTHER PEPTIDYLPROLYL ISOMERASE 1 259 - -
Dod01g2116 538 PANTHER PEPTIDYLPROLYL ISOMERASE 362 537 - -
Dod01g2116 538 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 165 256 IPR001179 GO:0003755
Dod01g2116 538 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 49 137 IPR001179 GO:0003755
Dod01g2116 538 SMART tpr_5 471 504 IPR019734 GO:0005515
Dod01g2116 538 SMART tpr_5 437 470 IPR019734 GO:0005515
Dod01g2116 538 SMART tpr_5 388 421 IPR019734 GO:0005515
Dod01g2116 538 Gene3D - 140 256 IPR046357 GO:0003755
Dod01g2116 538 SUPERFAMILY FKBP-like 22 136 - -
Dod01g2116 538 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 280 368 IPR001179 GO:0003755
Dod01g2116 538 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 160 229 IPR001179 GO:0003755
Dod01g2116 538 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 49 134 IPR001179 GO:0003755
Dod01g2116 538 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 1 259 - -
Dod01g2116 538 SUPERFAMILY FKBP-like 142 228 - -
Dod01g2116 538 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 248 358 - -
Dod01g2116 538 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 362 537 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g2116 Dod-Chr1 57731220 57742495 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g2116 27 536 Calmodulin-binding Proteins AT5G48570 55.106 0.0 566
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g2116 - - gmx:100785412 872.848
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g2116 01 57731220 57742495 Dod01g2116 01 57731220 57742495 ECH