Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g2071 ATGAGTTCTCAGCACTTCAACAATGATGGTGATGTTTTCATTAATGGAGGAGACATGATGAGGTTTCCCCCTTTAGTTCCTCTTCCTCTTGGTAACTCCGTAGGGGTTGTGGATCATGCTGGTGGTGTAGTAGAGGGTGGTATTAAGCCTGAGATGATGATGGGGTTTCAGATTCTGAGCCCCTCAGTAGTGTTCCAGCCCCATCAAGAGTGGAGGGGCACAAAGAGAACAAATGATGAAGGGGATGAGTGCTTCGGGGTTGAGAACAAGAGCTTGTCTTTGAAACTTGGTGAGGAAGTAGAAGAAGCTAAGGGCCCTGTTACTGCAGGAGGGAAAATTGGGCATGCTAAGCTATGTGCTAGAGGTCACTGGAGACCAGCTGAAGATGCAGAACTCAAGGCACTTGTTGCCCAATATGGCCCTCAAAACTGGAACTTGATTGCAGAACATCTCAAGGGAAGATCAGGCAAAAGTTGTAGATTGAGGTGGTTTAATCAGCTAGATCCTAGGATTAACAGAAGGGCCTTCTCTGATGAAGAAGAGGAGAGGCTCTTGGCTGCACATAAAATGTATGGTAACAAATGGGCCATGATTGCTAGGCTCTTTCCTGGGAGGACAGATAATGCAGTGAAGAACCATTGGCATGTAATCATGGCTAGGAAGCACAGGGAGCAGTCAAGCATGTATAGAAGGAGAAAGCCTGCTTCTGCTCCTGCTACTGCTGAAAGCCTTCCAAAGGGCTTAAAACTGACTCTATCAAACAATGCAGCAAGTGATCAGTTAACCATCTCAGATGAATCTGCCTCAACTTGCACTAACCTCTCCCTCACTCCCTCCTCAGCAAAACTAACCCCTAGGCTTTTTCGTAATCTAAGCCCTGTTCAACATCCCCAACGCAATGGATCACTAATAGGTGTACCTGAAACGAGTGTGGTAGCAAGGGTGGATGTGGGTTTTGACAAGTTTTCTGGTGCTTGCAATGGCACATGTGAGCCTGCACCCGTGGGAAATAAGCTCATGAGTGTGGACCAATCCAATCTTTCAGATTCAAACTCTGAAGTTTCAGTGTCCGAGTCAGTCGCCACCAATAGGTCCAACCTCTCAATTTACGGGGAAAGTGAAAACCTGGGTGAAAATAATAAGATTAACAACATGCCATTCATTGATTTTCTTGGGGTAGGAGCTGCATAG 1191 0.4626 MSSQHFNNDGDVFINGGDMMRFPPLVPLPLGNSVGVVDHAGGVVEGGIKPEMMMGFQILSPSVVFQPHQEWRGTKRTNDEGDECFGVENKSLSLKLGEEVEEAKGPVTAGGKIGHAKLCARGHWRPAEDAELKALVAQYGPQNWNLIAEHLKGRSGKSCRLRWFNQLDPRINRRAFSDEEEERLLAAHKMYGNKWAMIARLFPGRTDNAVKNHWHVIMARKHREQSSMYRRRKPASAPATAESLPKGLKLTLSNNAASDQLTISDESASTCTNLSLTPSSAKLTPRLFRNLSPVQHPQRNGSLIGVPETSVVARVDVGFDKFSGACNGTCEPAPVGNKLMSVDQSNLSDSNSEVSVSESVATNRSNLSIYGESENLGENNKINNMPFIDFLGVGAA* 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g2071 396 Pfam Myb-like DNA-binding domain 124 184 - -
Dod01g2071 396 SMART sant 172 220 IPR001005 -
Dod01g2071 396 SMART sant 120 169 IPR001005 -
Dod01g2071 396 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 121 167 IPR017930 -
Dod01g2071 396 CDD SANT 124 165 IPR001005 -
Dod01g2071 396 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 168 222 IPR017930 -
Dod01g2071 396 ProSiteProfiles Myb-like domain profile. 121 167 IPR001005 -
Dod01g2071 396 CDD SANT 175 215 IPR001005 -
Dod01g2071 396 SUPERFAMILY Homeodomain-like 121 214 IPR009057 -
Dod01g2071 396 Gene3D - 174 241 - -
Dod01g2071 396 ProSiteProfiles Myb-like domain profile. 168 218 IPR001005 -
Dod01g2071 396 PANTHER MYB PROTEIN-RELATED 92 395 - -
Dod01g2071 396 PANTHER OS08G0435700 PROTEIN 92 395 - -
Dod01g2071 396 Gene3D - 121 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g2071 Dod-Chr1 56905005 56907268 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g2071 97 288 MYB Transcription Factor Family AT5G17800 57.921 3.54e-71 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dod01g2071 Myb_DNA-bind_6 1.5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g2071 K09422 - gmx:100791795 396.741