LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dod01g2054	ATGTTTCTAGGGTTTATCGCGTTCTTCCTCTGTGATTTGTTTTCCCTTCCCGAAATGGCAAGCAGAAAGGAAGAAGAAAGGAACGAGAAAATCATCAGAGGTCTCATGAAGCTTCCGCCAAATCGAAGATGCATTAACTGTAACAGTCTGGGTCCGCAGTATGTTTGTACGAATTTTTGGACCTTCATTTGCATGACATGCAGTGGAATACATCGTGAGTTTACCCATCGGGTGAAGTCTGTATCTATGGCGAAGTTCACATCACAAGAAGTTGATGCTCTTCAAAATGGGGGTAACCAGCGTGCACGGGAAATATATCTGACAAATTGGGACTTCCAAAGGCAGCGGTTACCAGATAGCAGCAATGTTGATAAAATAAGGGAGTTTATAAGGAACGTGTACGTGAATCGAAGATATGCTGCAACAAAGTCTTCTGACAAGCCTCCAAGAGATATGCAGAGCACTAGAATCCATGAAGATGATACACGACGCGCCAGTTCCTATCACTCTTATTCCCAAAGTCCTCCATATGATTACCAATATGAAGATCGACGATATGGAAAACATGCAGCTGCACTAACCAGGAAGCCTGGTTCAGATAAAGTTCGCTATGAAGGAAAGATGAGTAGTATTATCTATAGTCCTGGCCGCTTCAGTGATCATGCATATGATGATAGATTTGCAAATGAGGGACCCAGTCCAAGAATTTCAGACTTTTCTGTGTATAGTGGTGGGGAGCAATTCAAATCTGATGTTCAGTCTCCCACCTTTCATAAGGATGTTCGCTCTAATAGTCCAGCCTATCAGCATTCTGGTCACCGTTCAAGTGAAGATGTATGGTCTCTTGCACAAAATACATCTTTGGGGACAAATGCCAAGAGAGATGAAGATGGAATTCAGCACCCACAGAGAACTACATCACTTGGATCAACAGACAGCAACCTGTCATCATTCAGATCTTACAATTCTGGTGGTTTGGTTGATTTTTTCTCTGAACCTGTCCAAGCTTTTGGAACCCCTCAGGATAAAGCCTCTAGTGTTTCTCAACCACCTGCTCCCGCAAGTTTTGCAAGTTCAGAGATTTCTGCATCACCTGTGGCAACTGGACCATTTCCTTCATCAACTTCAATTGATCTTTTTCAGTTGCCAGAAGCACCCTCTCAGTCTACATCGGTGGATCTGGTTCAGTCATCTGTTTCGTCTGCAGTTCAATCTTTCAATGAAAGGCAACCCACAAAAACTTCACAATCCTCATCTGTCGACTTCTTTACAAACCTTTCTCAGCAGCTGTCTACTGCAACCTCAAATGAGAAGTTGCTGGACTTATCTGTCCCTAAAAATGAAGGGTGGGCAACATTTGATACGCCTCAGTACACAACATCTACTGCACAATTTGAAATTCCAGCAGGAGTACCTTCAACTGCTGATACTTTGCAGGAAAGATTTGATCCATTTTTGACCTTAAATGGAAATATGCAATGGCCATATCTGGAAACTTCTAGTGTTAGTGTTCCTTCTTCAGTTACGTCTAATGTATGGCATGATGGTGTGTGGAATGCAGAAGAACATGCTTCTGCTACTGCAGCAAACACTCAACCATGGAATGCATTTGAAGATTCTGTTACCCCCGTTCCTGTGGATGCTCTTGATCAAGGATCACAATTGCACAATCTCCCATCAACTGATGATCAATTTTTGGATTTAAGAGCTTCTGAGGGGTCCAATAAAGGTGGGATGCAAGGCATTGCCCCTGTTGGTGGGTTTGATGATCATGACATCGCATCACATTATATTGGGGGCTCATCATATCCTCCTTCCGCAATTCCTCCTAAGGGAGAGACTCAACCTAATGCGATCAGTCGAAAATCAACTAATCCATTTGATTTTCCCGATGATTCTGATGTAGACCACAGTAATATGTTTCTTGATCTTAGCTCATTGCAAGCTGCTCTGCCGGATTCTCAGTTACCACCCACTTTCCATAGTGGTATCACTGAACCATGGCTGCCTCAAAGTTCGGTGAACCCATATATTTCCTCTGCAGGACAAGGTGGTTTGACATTCATGGCTGCTCAACCACCAAGTTCTCAAATACCGAACGTCCAGACGCAGGAACCAGTTGCATCTTTTGGAGGGAATCCTTTTGCATAG	2151	0.4333	MFLGFIAFFLCDLFSLPEMASRKEEERNEKIIRGLMKLPPNRRCINCNSLGPQYVCTNFWTFICMTCSGIHREFTHRVKSVSMAKFTSQEVDALQNGGNQRAREIYLTNWDFQRQRLPDSSNVDKIREFIRNVYVNRRYAATKSSDKPPRDMQSTRIHEDDTRRASSYHSYSQSPPYDYQYEDRRYGKHAAALTRKPGSDKVRYEGKMSSIIYSPGRFSDHAYDDRFANEGPSPRISDFSVYSGGEQFKSDVQSPTFHKDVRSNSPAYQHSGHRSSEDVWSLAQNTSLGTNAKRDEDGIQHPQRTTSLGSTDSNLSSFRSYNSGGLVDFFSEPVQAFGTPQDKASSVSQPPAPASFASSEISASPVATGPFPSSTSIDLFQLPEAPSQSTSVDLVQSSVSSAVQSFNERQPTKTSQSSSVDFFTNLSQQLSTATSNEKLLDLSVPKNEGWATFDTPQYTTSTAQFEIPAGVPSTADTLQERFDPFLTLNGNMQWPYLETSSVSVPSSVTSNVWHDGVWNAEEHASATAANTQPWNAFEDSVTPVPVDALDQGSQLHNLPSTDDQFLDLRASEGSNKGGMQGIAPVGGFDDHDIASHYIGGSSYPPSAIPPKGETQPNAISRKSTNPFDFPDDSDVDHSNMFLDLSSLQAALPDSQLPPTFHSGITEPWLPQSSVNPYISSAGQGGLTFMAAQPPSSQIPNVQTQEPVASFGGNPFA*	717

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dod01g2054	716	MobiDBLite	consensus disorder prediction	603	624	-	-
	Dod01g2054	716	ProSiteProfiles	ARF GTPase-activating proteins domain profile.	29	147	IPR001164	GO:0005096
	Dod01g2054	716	MobiDBLite	consensus disorder prediction	141	180	-	-
	Dod01g2054	716	MobiDBLite	consensus disorder prediction	143	166	-	-
	Dod01g2054	716	MobiDBLite	consensus disorder prediction	691	716	-	-
	Dod01g2054	716	SUPERFAMILY	ArfGap/RecO-like zinc finger	27	140	IPR037278	-
	Dod01g2054	716	CDD	ArfGap_AGFG	29	141	-	-
	Dod01g2054	716	Gene3D	Arf GTPase activating protein	18	151	IPR038508	-
	Dod01g2054	716	MobiDBLite	consensus disorder prediction	250	315	-	-
	Dod01g2054	716	PANTHER	ARFGAP/RECO-RELATED	19	716	IPR044820	GO:0005096
	Dod01g2054	716	MobiDBLite	consensus disorder prediction	691	709	-	-
	Dod01g2054	716	MobiDBLite	consensus disorder prediction	250	293	-	-
	Dod01g2054	716	Pfam	Putative GTPase activating protein for Arf	30	141	IPR001164	GO:0005096
	Dod01g2054	716	SMART	arf_gap_3	29	147	IPR001164	GO:0005096
	Dod01g2054	716	PANTHER	ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD14-RELATED	19	716	-	-
	Dod01g2054	716	MobiDBLite	consensus disorder prediction	339	369	-	-
	Dod01g2054	716	PRINTS	HIV Rev interacting protein signature	78	99	IPR001164	GO:0005096
	Dod01g2054	716	PRINTS	HIV Rev interacting protein signature	60	77	IPR001164	GO:0005096
	Dod01g2054	716	PRINTS	HIV Rev interacting protein signature	41	60	IPR001164	GO:0005096

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dod01g2054	Dod-Chr1	56672197	56680737	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dod01g2054	32	134	C2H2 Transcription Factor Family	AT4G05330	35.088	2.47e-12	67.0

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Dod01g2054	K15044		-	gmx:100817495	942.954