Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g2034 ATGGGGAAGAAGCGGAAGGTCGCACCCAAATCATCATCTCAATCCGCTGAACCCTCTTCCAAGCAGCCCCAGCAAGAGCCCCAACAATTCGAAGAACAAGAAGAAGTAGAAGAAGTAGAAGTCGAAGTCGAAGTCGAAGGAGGAGAAGAAGAAGAAGAAGACGAAGAAGAAGAAGAACAACAGCAACAACAACAACAAGACGAAGACGACGACCCCATCCCGAAGCTTTTGGAACCCTTCGGTAAGGACCAGATCCTGAGCCTCCTGACCGAAGCCGCCGCCAAGCACCGCGACGTGGCGGAGCGTATCCGCCGCGCCGCCGACGAGGACGCCGTCCACCGCAAGATCTTCGTCCACGGCCTCGGCTGGGACACTACCGCCGACACACTCATCAACGCGTTCCGCCAGTACGGCGAGATCGAGGACTGCAAGGCCGTCACCGACAAGGTCTCCGGCAAGTCCAAGGGCTACGGCTTCATCCTCTTCAAGACCCGCCGCGGCGCCCGCAACGCCCTCAAGCAGCCTCAGAAGAAGATCGGCAACCGCATGACCGCCTGCCAGCTGGCATCCATCGGCCCCGTCAGCCCGCAGCAACAGCAACAACAGCAGCAGCCTTCTTCCGTGGCGGCCGCCTCATCTGCTGCTCCGGCAACGGTTTCCGAATACACGCAGCGGAAGATCTACGTGAGCAACGTTGGTCCCGAATTGGACCCGCAGAAGCTTCTTGCCTTCTTCTCGAGGTTCGGCCAGCTCGAGGAAGGGCCGTTGGGGCTCGACAAGGTCACGGGGAAGCCGAAAGGGTTCTGTTTGTTCGTTTACAAGAGCGTCGAGAGCGCGAGGAGGGCGCTGGAGGAGCCGCACAAGGAGTTTGAGGGGCACATCCTGCACTGCCAGAAGGCTATTGATGGACCCAAGCCTGGGAAGTTGCAGCAACAGCAGCATGGGAATGCGCAGAGGACGCAGTTTCAGAGGAATGATAATGCTAATTTCGGTGCTGGTGCTGGTGCTGGTGTTGGTGGTGCTGTTGGTGGTGCTGTTGTTGGTGGTGCTGTCCAGGGGCATCTGATGGCACCGGCAGCTGCCAGCCGCGGCACCGATTGGGATCAGTCAGGTGGCGGGGCAGCAGCTGAATCCGGCAATTGGGCAGGCGCTGACGGCACTGCTTGCTTCGCAGGGGGCTTCTTTGGGGCTAACTAA 1197 0.594 MGKKRKVAPKSSSQSAEPSSKQPQQEPQQFEEQEEVEEVEVEVEVEGGEEEEEDEEEEEQQQQQQQDEDDDPIPKLLEPFGKDQILSLLTEAAAKHRDVAERIRRAADEDAVHRKIFVHGLGWDTTADTLINAFRQYGEIEDCKAVTDKVSGKSKGYGFILFKTRRGARNALKQPQKKIGNRMTACQLASIGPVSPQQQQQQQQPSSVAAASSAAPATVSEYTQRKIYVSNVGPELDPQKLLAFFSRFGQLEEGPLGLDKVTGKPKGFCLFVYKSVESARRALEEPHKEFEGHILHCQKAIDGPKPGKLQQQQHGNAQRTQFQRNDNANFGAGAGAGVGGAVGGAVVGGAVQGHLMAPAAASRGTDWDQSGGGAAAESGNWAGADGTACFAGGFFGAN* 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g2034 398 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 225 325 IPR000504 GO:0003723
Dod01g2034 398 SUPERFAMILY RNA-binding domain, RBD 107 203 IPR035979 GO:0003676
Dod01g2034 398 MobiDBLite consensus disorder prediction 8 29 - -
Dod01g2034 398 Gene3D - 194 323 IPR012677 -
Dod01g2034 398 PANTHER GEO13361P1-RELATED 16 382 - -
Dod01g2034 398 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 116 182 IPR000504 GO:0003723
Dod01g2034 398 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 227 295 IPR000504 GO:0003723
Dod01g2034 398 MobiDBLite consensus disorder prediction 192 212 - -
Dod01g2034 398 SUPERFAMILY RNA-binding domain, RBD 199 327 IPR035979 GO:0003676
Dod01g2034 398 MobiDBLite consensus disorder prediction 1 78 - -
Dod01g2034 398 Coils Coil 45 69 - -
Dod01g2034 398 Gene3D - 42 193 IPR012677 -
Dod01g2034 398 SMART rrm1_1 226 298 IPR000504 GO:0003723
Dod01g2034 398 SMART rrm1_1 115 187 IPR000504 GO:0003723
Dod01g2034 398 CDD RRM_RBM24_RBM38_like 225 300 - -
Dod01g2034 398 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 114 191 IPR000504 GO:0003723
Dod01g2034 398 MobiDBLite consensus disorder prediction 30 66 - -
Dod01g2034 398 PANTHER - 16 382 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g2034 Dod-Chr1 56347312 56348508 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g2034 224 313 C2H2 Transcription Factor Family AT2G19380 34.444 4.95e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g2034 K12741 - gmx:100784200 412.92