Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g2028 ATGTATCACACGAAGAAGTTTTCGTCAGCAACTATGGTGCCGCATAAACCTCAAGGAGGAGGTGGTGGTGGTGGTGAACAAGTTGCAAATGTTGGGGTTTTAGATGGATCTGCGGTGAAAAATGCGGCACCTGCAGCTGGGGGAAGTGGCAAACAGCGTCTGCGATGGACATCTGATCTTCATGACCGTTTTGTGGATGCCATCACGCAACTTGGTGGACCAGATAGAGCAACACCTAAAGGTGTTCTAAGAGTGATGGGTGTACCTGGACTTACTATTTATCATGTTAAAAGCCATTTACAGAAATATCGCCTTGCAAAGTACTTGCCTGAATCGTCAGCTGATGGTCAAGACTCCAAAGATGAGAAAAGGATACCTGGAGATAGTGTTTATGGCATAGATTCTTCCCCGGGATTCCAAATCAATGATGCTCTAAGAATGCAGATGGAGGTTCAGAAACGTCTTCATGAACAGCTTGAGGTGCAAAAGCAGTTACAAATGAGGATTGAAGCGCAGGGTAAATACTTGCAGAAGATCATAGAGGAACAGCAGAAATTAGGTAGTAACCTGACAACTACGGAAACACCGTCATTGTCCCATGATAAGCAAAATCATCCTCGGTCTGAGCCTTCTGGATCTAGTGATGCCATTGCAGATGGGGTATCTCCACTTAAAAAACAGAGAATTGATGATGGTTCAAAGGGTGGCTTGGCTGCTTCTACGGCGACAACAAAGACTGCACAAATAACTGATTCTAGTGTTGGTCGTTTGGATCCAAACTCGTATGAGGATGGTGCTGGGTTTGGATTTGATTTGGAGACACAAAAGGATGAAGATAAGGAGAGTGAGCAGTAA 855 0.4468 MYHTKKFSSATMVPHKPQGGGGGGGEQVANVGVLDGSAVKNAAPAAGGSGKQRLRWTSDLHDRFVDAITQLGGPDRATPKGVLRVMGVPGLTIYHVKSHLQKYRLAKYLPESSADGQDSKDEKRIPGDSVYGIDSSPGFQINDALRMQMEVQKRLHEQLEVQKQLQMRIEAQGKYLQKIIEEQQKLGSNLTTTETPSLSHDKQNHPRSEPSGSSDAIADGVSPLKKQRIDDGSKGGLAASTATTKTAQITDSSVGRLDPNSYEDGAGFGFDLETQKDEDKESEQ* 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g2028 284 MobiDBLite consensus disorder prediction 189 284 - -
Dod01g2028 284 Gene3D - 50 109 - -
Dod01g2028 284 PANTHER OS05G0491500 PROTEIN 3 263 - -
Dod01g2028 284 Pfam Myb-like DNA-binding domain 54 104 IPR001005 -
Dod01g2028 284 MobiDBLite consensus disorder prediction 270 284 - -
Dod01g2028 284 Coils Coil 142 162 - -
Dod01g2028 284 MobiDBLite consensus disorder prediction 112 133 - -
Dod01g2028 284 SUPERFAMILY Homeodomain-like 50 105 IPR009057 -
Dod01g2028 284 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 48 108 IPR017930 -
Dod01g2028 284 MobiDBLite consensus disorder prediction 237 257 - -
Dod01g2028 284 MobiDBLite consensus disorder prediction 1 24 - -
Dod01g2028 284 Pfam MYB-CC type transfactor, LHEQLE motif 140 185 IPR025756 -
Dod01g2028 284 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 3 263 IPR044848 GO:0003700
Dod01g2028 284 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 51 106 IPR006447 GO:0003677
Dod01g2028 284 MobiDBLite consensus disorder prediction 114 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g2028 Dod-Chr1 56309043 56313881 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g2028 42 233 G2-like Transcription Factor Family AT3G04450 45.274 9.97e-53 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Dod01g2028 Myb_DNA-binding 2.8e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g2028 - - gmx:100783132 431.409