Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g1971 ATGAGCAAGACGACGACACCGTGCTGCAGCAAGGTGGGGATCAAGAAAGGGCCATGGACGCCAGAGGAGGACGAGATCCTTGCCAATTTTGTCAGGAAGGAAGGTGAGGGGCGGTGGCGGACACTGCCCAAGCGGGCGGGACTGCTGCGCTGCGGCAAGAGCTGCCGCCTTCGCTGGATGAACTACCTCCGCCCCTCCGTCAAGAGAGGCCGCATCGCTCCCGATGAGGAAGATCTCATCCTTCGCCTTCACCGCCTATTGGGCAACCGGTGGGCTTTGATCGCTGGGAGAATACCTGGGAGGACTGATAATGAGATTAAGAATTACTGGAATACCCATATAAGCAAGAAGCTCATAAGGCAAGGAATAGATCCAAGGACCCACAAGCCACTGTTAAACAATTATACCAATCATACCAATATCAAAACCCCCACTACTACCATTACTACTCCAGATAGTTTTCTCAGTGATTCTCAGAGAGTTGAACATCATGACCATGAGTCAAATGATGTAGCCTCATCTAACCCTATTATTCCAACACCACAACCTGTCACGGGTCATATTAGTCCTCCTGCACTAGAAATTGGTAGCAGCAGCAGGACTCAAACACACTTTAAGGTTCCAGTTACTGCTGGGAAGCCGATGGATTATCAAAATAAAGTGGGGCATCTTGTTGATGGAAATGACCATGGCAGTAATGGGGTTAATGATGAGGAAGATACGTTCTTGTTGTTTCTGAACTCTTTGGTGGATGATGATGATAAAGTCATGAGTACTGCACAAGCACAAACACTTCAGGCTGCTGATTCTATGTTTCCTCCGCCACTATGCCCTTCAGCCTCTTTTGCGCAACCTTTCGGTCTTGTTCGCCCCATTTTTGACAAGGAAGTAGCTGCTTTTGGTTTTTGTCTCGCTGAAACTGGGGAGGATGATGATGACCAGGTTCCAGAGTTCCACAGTGGTGGGGAGGGAGCCAATGACCTTGAGGTTTGTTTGGATGGCGTGCTCTTGCTCTATGTATCCAGAGCACCTTTTCAGTCTGGACTTGGGAACAGGCATTCTCGCAGCTCGCTTTTGAAATTGAATGTGTATTGA 1095 0.4877 MSKTTTPCCSKVGIKKGPWTPEEDEILANFVRKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYLRPSVKRGRIAPDEEDLILRLHRLLGNRWALIAGRIPGRTDNEIKNYWNTHISKKLIRQGIDPRTHKPLLNNYTNHTNIKTPTTTITTPDSFLSDSQRVEHHDHESNDVASSNPIIPTPQPVTGHISPPALEIGSSSRTQTHFKVPVTAGKPMDYQNKVGHLVDGNDHGSNGVNDEEDTFLLFLNSLVDDDDKVMSTAQAQTLQAADSMFPPPLCPSASFAQPFGLVRPIFDKEVAAFGFCLAETGEDDDDQVPEFHSGGEGANDLEVCLDGVLLLYVSRAPFQSGLGNRHSRSSLLKLNVY* 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g1971 364 MobiDBLite consensus disorder prediction 159 179 - -
Dod01g1971 364 PANTHER TRANSCRIPTION REPRESSOR MYB5-LIKE 4 289 - -
Dod01g1971 364 Gene3D - 73 148 - -
Dod01g1971 364 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 63 IPR017930 -
Dod01g1971 364 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 4 289 - -
Dod01g1971 364 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Dod01g1971 364 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Dod01g1971 364 Pfam Myb-like DNA-binding domain 73 113 IPR001005 -
Dod01g1971 364 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Dod01g1971 364 SUPERFAMILY Homeodomain-like 13 110 IPR009057 -
Dod01g1971 364 CDD SANT 74 114 IPR001005 -
Dod01g1971 364 Gene3D - 14 69 - -
Dod01g1971 364 SMART sant 68 116 IPR001005 -
Dod01g1971 364 SMART sant 15 65 IPR001005 -
Dod01g1971 364 CDD SANT 18 63 IPR001005 -
Dod01g1971 364 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g1971 Dod-Chr1 55253547 55258649 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g1971 1 154 MYB Transcription Factor Family AT3G13540 74.675 4.23e-82 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dod01g1971 Myb_DNA-binding 5.9e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g1971 K09422 - zju:107415078 280.796
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g1971 01 55253547 55258649 Dod01g1971 01 55253547 55258649 ECH