Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g1945 ATGGCAATTGCACGCACTGGAGTGTATGTTGATGACTATTTGGAGTATGCTAGCACTTTGCCCGCTGAGCTTCAGAGGCTTCTCAATACCGTTCGAGAGCTCGATGAACGATCCCAATCTATGATAAACCAGACTAGGCAGCAGACAAAATACTGTATGGGATTCTCATCACATGGCTCTAAGAAGGGTAATCATGCCAGTGGTCATAACTATAATAACAACAATCACGCGAATGAGGACGATGATGTTGCTATTGAGAAAATGCGAAAAGAAATTGAAGCCAACCAGGATAATGCATTGAGTTTATGTACTGAGAAAGTTTTGTTGGCACGGCAAGCATATGACTTGATAGATAGCCATGTGAAACGACTTGATGAGGATTTAAACAACTTTGCTGAAGATCTGAAGCAAGAGGGGAAAATACCGCCGGATGAACCAGCAATTCTTCCTCCATTGCCTATAGTCCCGAAACCTGAAAAACGCAAGCCCGTATATGTAACACCTCAATCAAAGAGACTTGATTACAGGGATAGAGATTGGGATCGGGAGCGTGATAGAGACTTTGAGCTAATGCCTCCACCAGGAAGCCATAGAAAGGAGTATGCAACTCCTATGGATATGGATCAACCCATTGATCCAAATGAACCTACATACTGTGTTTGTCATCAGGTGTCTTTTGGAGACATGATTGCTTGCGACAATGAAAATTGCCAAGGAGGTGAATGGTTCCACTATTCATGTGTTGGCCTAACACAAGAGACAAGGTTCAAGGGGAAGTGGTATTGTCCGACCTGCAGATTACTACCACAATGCCAATGA 819 0.4335 MAIARTGVYVDDYLEYASTLPAELQRLLNTVRELDERSQSMINQTRQQTKYCMGFSSHGSKKGNHASGHNYNNNNHANEDDDVAIEKMRKEIEANQDNALSLCTEKVLLARQAYDLIDSHVKRLDEDLNNFAEDLKQEGKIPPDEPAILPPLPIVPKPEKRKPVYVTPQSKRLDYRDRDWDRERDRDFELMPPPGSHRKEYATPMDMDQPIDPNEPTYCVCHQVSFGDMIACDNENCQGGEWFHYSCVGLTQETRFKGKWYCPTCRLLPQCQ* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g1945 272 ProSiteProfiles Zinc finger PHD-type profile. 216 268 IPR019787 -
Dod01g1945 272 Pfam Inhibitor of growth proteins N-terminal histone-binding 9 131 IPR024610 -
Dod01g1945 272 PANTHER PHD FINGER PROTEIN ING2 2 268 - -
Dod01g1945 272 PANTHER INHIBITOR OF GROWTH PROTEIN 2 268 IPR028651 -
Dod01g1945 272 Coils Coil 24 44 - -
Dod01g1945 272 MobiDBLite consensus disorder prediction 57 74 - -
Dod01g1945 272 Gene3D - 5 129 - -
Dod01g1945 272 SMART ING_2 9 131 IPR024610 -
Dod01g1945 272 SMART PHD_3 218 266 IPR001965 -
Dod01g1945 272 CDD PHD_ING 218 265 - -
Dod01g1945 272 MobiDBLite consensus disorder prediction 57 78 - -
Dod01g1945 272 SUPERFAMILY FYVE/PHD zinc finger 192 267 IPR011011 -
Dod01g1945 272 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 210 267 IPR013083 -
Dod01g1945 272 CDD ING_plant 17 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g1945 Dod-Chr1 54715850 54720448 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Dod01g1945 ING 7.2e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g1945 K11346 - gmx:100787916 493.426