Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g1937 ATGGATGTGTGCCAAAATGTATCAGTTTCCAGTGAGTGCTTGCAGCAAGAGCAAGCCCTCCTTGCCCCTTCTTGCTCAAAGCTTTCTACATCTTCAAGCAGCCTTGATGACCTCTTCTCTGCTCAGAACACGCAAGTGGATGTTGGCTTGGAATGGTTGTCAGTGTTTGTTGAAGACTGCTTTTCCAGTCCACCAAGCTGTGTCTTGGAACCTGCTGGTGTTGTTCAGGCTACAAGCAAAAGCTCAAAACCTTCAAGCACGCTGAAGAGGCCACAGCAAAATAGTGAGCCTTCTCTACAGAATTTTGCAGTGCCTGGGAAGGCCAGAAGCAAAAGAAAAAGGCTTTCAGCTCCTAGAAGCACCAAAGACCCTTTGAGCATCTGGTCACACCATTTGAACCCTCAAAATGAGGCCTTGAGTTCAGACCCTCCTCTCCTCAAACAGGCTTATTGGTTGGCTGATAGTGAACTCTTTGTCCCTAAGCAGCAGAAGAAGGATGAACAAGGCGCAACCAAAGATGGGGAAGTGATGGTGCAGAAGGGGATTGTGAGGAAGGAAAGTTCTGGGGACTCTGATGAGGCTGAGGCTAGCAATGGTCAGCATCCAGTGCCAAGGAGGTGCACACATTGCCTGGCACAGAGGACCCCACAGTGGAGGGCAGGACCATTGGGTCCAAAGACACTATGCAATGCATGTGGGGTGAGGTACAAGTCCGGTAGGTTGCTACCAGAATATAGGCCAGCAAAGAGTCCCACTTTTGTTAGCTACTTGCACTCCAATTCCCACAAGAAAGTCATGGAGATGAGGATGGCTGTTCTATCCTCCATTCCTAGCGAGCAGTAG 843 0.4947 MDVCQNVSVSSECLQQEQALLAPSCSKLSTSSSSLDDLFSAQNTQVDVGLEWLSVFVEDCFSSPPSCVLEPAGVVQATSKSSKPSSTLKRPQQNSEPSLQNFAVPGKARSKRKRLSAPRSTKDPLSIWSHHLNPQNEALSSDPPLLKQAYWLADSELFVPKQQKKDEQGATKDGEVMVQKGIVRKESSGDSDEAEASNGQHPVPRRCTHCLAQRTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPAKSPTFVSYLHSNSHKKVMEMRMAVLSSIPSEQ* 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g1937 280 CDD ZnF_GATA 206 253 IPR000679 GO:0006355|GO:0043565
Dod01g1937 280 SMART GATA_3 201 255 IPR000679 GO:0006355|GO:0043565
Dod01g1937 280 ProSiteProfiles GATA-type zinc finger domain profile. 205 237 IPR000679 GO:0006355|GO:0043565
Dod01g1937 280 Pfam GATA zinc finger 207 241 IPR000679 GO:0006355|GO:0043565
Dod01g1937 280 ProSitePatterns GATA-type zinc finger domain. 207 232 IPR000679 GO:0006355|GO:0043565
Dod01g1937 280 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 203 265 - -
Dod01g1937 280 PANTHER GATA TRANSCRIPTION FACTOR 1 280 - -
Dod01g1937 280 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 1 280 - -
Dod01g1937 280 MobiDBLite consensus disorder prediction 78 128 - -
Dod01g1937 280 Gene3D - 197 268 IPR013088 GO:0006355|GO:0008270
Dod01g1937 280 MobiDBLite consensus disorder prediction 78 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g1937 Dod-Chr1 54560938 54562644 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g1937 26 269 C2C2-Gata Transcription Factor Family AT4G32890 38.956 3.62e-43 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Dod01g1937 GATA 1.2e-14 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g1937 - - gmx:100786479 398.667
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g1937 01 54560938 54562644 Dod01g1937 01 54560938 54562644 ECH