Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g1931 ATGGCTGGTGATCCCTCTTTTCAGCCTTTTGTGGATGCCCAGATGCATCAGTTTACATTTCAAGGCATGGAGGTGGCAGAGTCCAAGCCTTCAGCTGTGGAGTCACCGGTCACCCTTTTAATTAAGCACCTTCCTGAAGCTATACCTCATGACACCCTCTCTCGACTCCTATCCCATTATGGTGCTTCCTCTGTTCGTCCTTACTCTAGCGGAAGGTTGAGAAATTGTGCTTTTGTGGATTTTAAAAATGATATGCTGGCATCTCAAGCACAATGTCAACTAAATGGGCTGAGGTTTCTTGGCAAAGTCTTGTCAGCAGAAAGAGCTTATAACCCAATTGAGCATGCTGAAAATAGCAGTGTAACTCTGCTAGGAAAGGACTCTCAAACATCAGTGGCTAAGGACGCAAATGTAACCAAACCTATTGATGGAGATACAAAATCAGGATGCCTCCCTATTTCTGAGCCAATTGCTGAAAGACTTGGTGTTGAATATCCATTTCCTCCTCACCTTGAGTATGCTTACCCTCCACCAGATGGTAATATACTGACCAACATCGTCAATGCTCTTATTGCTGTTCCCCGCTTTTACACTCAGGTTCTACACTTAATGAACAAAATGAACATTCCAGCTCCATTTCGAATGGCACTGCCAACACCACCTCTACCTCCAGAGGTGCCAGCCCCACTGCCACCCCCTCTTGCTGCTGCTGCTGTACCTGTGAAGCCTCAGCCTGCAGATCTGTCTAGTAGTGAATCAGAGATGGAATCTTCAGATGAGGAGGAAGGGGCAAGGACAGAAAAACATGAGAAAAAGCGTGCTAGGCGTGACATTGTTGGCCCAGCCATTGATAAAGATGTGGCTCATGAGGACGTTGGAGTAAAACCAGCCACCTTGGTCCCAAAAGAAATCCCACTGATAAAAAGGAAGAACACTGTCTTACAGATAAAAATTGCTCCCAAAGCAAATCTGGATGAACATAAGAATGATGACTCAAGCCAAGAGTTACAAGAACCAGAAAAAGATAGTCCAGATTCTCATAGATTTCTGACTCCAGAAGAATTAGAGAGCGGAAAGTTGCCTCCTGAAGAAATCTTATCTCTTCCAATGTTTAAGAACTATACCACTGGAAACCCTGCTCCTGTGTTGTATATTAAGAATTTGGCAAAAGATGTGATTGGTGAAGATTTCTATTTTATATTTGGGTCCTTGTTTGGAAGTATTGAGGCTGCCAAGTCTGGTCTCCATGTCAAACTGATGCAGGAAGGAAGGATGAGAGGTCAAGCATTTTTAACATTCCCGTCAATTGAACTGGCTCACCATGCCCTGAATCTAGTGAATGGATATGTATTTAAAGGCAAGCCAATGATCATCCAGTTTGGTCGGAATCCTGCTGCTGCAAAAGGGACATGA 1413 0.4409 MAGDPSFQPFVDAQMHQFTFQGMEVAESKPSAVESPVTLLIKHLPEAIPHDTLSRLLSHYGASSVRPYSSGRLRNCAFVDFKNDMLASQAQCQLNGLRFLGKVLSAERAYNPIEHAENSSVTLLGKDSQTSVAKDANVTKPIDGDTKSGCLPISEPIAERLGVEYPFPPHLEYAYPPPDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPFRMALPTPPLPPEVPAPLPPPLAAAAVPVKPQPADLSSSESEMESSDEEEGARTEKHEKKRARRDIVGPAIDKDVAHEDVGVKPATLVPKEIPLIKRKNTVLQIKIAPKANLDEHKNDDSSQELQEPEKDSPDSHRFLTPEELESGKLPPEEILSLPMFKNYTTGNPAPVLYIKNLAKDVIGEDFYFIFGSLFGSIEAAKSGLHVKLMQEGRMRGQAFLTFPSIELAHHALNLVNGYVFKGKPMIIQFGRNPAAAKGT* 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g1931 470 MobiDBLite consensus disorder prediction 261 282 - -
Dod01g1931 470 MobiDBLite consensus disorder prediction 235 282 - -
Dod01g1931 470 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 37 111 IPR000504 GO:0003723
Dod01g1931 470 SMART rrm1_1 382 459 IPR000504 GO:0003723
Dod01g1931 470 SMART rrm1_1 38 107 IPR000504 GO:0003723
Dod01g1931 470 Gene3D - 17 120 IPR012677 -
Dod01g1931 470 MobiDBLite consensus disorder prediction 324 356 - -
Dod01g1931 470 PANTHER RNA-BINDING REGION-CONTAINING PROTEIN 3 30 468 - -
Dod01g1931 470 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 39 104 IPR000504 GO:0003723
Dod01g1931 470 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 383 455 IPR000504 GO:0003723
Dod01g1931 470 CDD RRM2_RBM40_like 382 461 - -
Dod01g1931 470 SUPERFAMILY RNA-binding domain, RBD 36 463 IPR035979 GO:0003676
Dod01g1931 470 Gene3D - 376 469 IPR012677 -
Dod01g1931 470 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 381 463 IPR000504 GO:0003723
Dod01g1931 470 PANTHER UNCHARACTERIZED 30 468 IPR045164 -
Dod01g1931 470 CDD RRM1_RBM40_like 38 109 IPR034147 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g1931 383 459 Eukaryotic Initiation Factors Gene Family AT3G16380 32.468 2.98e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g1931 K13157 - gmx:100814307 659.448