Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g1929 ATGGAAGAACCGATTGTGGTGAACAAGGGTGAGGAGCCTCTGGATTTGCCTCCGGGTTTCAGGTTCCACCCCACTGATGAAGAGATAATCACGTATTATCTCACTGAGAAGGTGCTGAATAGCAGTTTCAGTGCAACTGCTATTGGAGAAGCTGATTTAAACAAGTGTGAACCATGGGATTTACCAAAGAAAGCCAAGATGGGAGAGAAAGAGTGGTACTTTTTCTGTCAAAAAGACAGGAAGTACCCAACAGGCATGAGAACCAATAGAGCAACTGATTCTGGGTATTGGAAGGCCACAGGGAAAGACAAGGAGATTTTCAAAGGGAAAGGTAACCTTGTTGGGATGAAGAAGACCCTTGTGTTCTACAGAGGGAGAGCTCCAAAGGGAGAGAAAACCAATTGGGTCATGCATGAATTTAGATTAGAGGGCAAATTTGCAAATTACAACCTCCCTAAGGCTGCAAAGGATGAATGGGTTGTCTGCAGGGTTTTTCACAAGAACACAGATGTTAAAAAGACCTCAATTCCTGGCCTATTGAGGATGAGCTCTATAGGGGATGATCTTCTGGATTGTTCCTCACTCCCACCTCTCATGGACCCTTACCCTCCTTATAGCAACACCAACAAAACTGCAGCCTATAGTGGCGATGAATTCAAAGGCACCACCACCAACCCTCTATCATCATCATCAGCTAAATCACCATCAGACGGCTATTATCTTCCCAGCTTCTCAGTCCACAACAATAACCATCAGCTCCTCATCAAGCCTGAAGACCACAGGAACTATGAGATTCCCATCAACAACAACAACTACCCTTCTTCCAACCAAGCCAGTTTCAGCAACCACATGGGGAACAACAACAACAACACACTGCTCTCATCATCATCACAGCCTCAAATTAAAGTCCAGAATCCAAACACCCCCTTTCAGCAGAACTTGTTCTCAGATTATAGTCATTTGCAACAAAACAGGATGAACAGTTCATCATGGCCAAGTGTTGCCGCAGCAAGCTCAGGTTTTGGGATCAACAACAGCCAATATCATCATGACAATATCCTAAGAACAATTGCAGCCAAGAACAACAATGAGTGCAAGATGGAGCAGTTCTCATCATGCAACCAATCTGTGATGAGTGTGTCACAAGACACTGGCCTGAGCAACGACAGAAACACTGACACATCCTCAGTGGTCTCAAAGCAGCAAGACATGGGTGGGAATAGGGCATTGTATGAGGATCTTGAGGGTCCTTCATCGGTTGCACCTCTCTCAGATTTGGAATGCTTGTGGGATGATTACTGA 1302 0.4501 MEEPIVVNKGEEPLDLPPGFRFHPTDEEIITYYLTEKVLNSSFSATAIGEADLNKCEPWDLPKKAKMGEKEWYFFCQKDRKYPTGMRTNRATDSGYWKATGKDKEIFKGKGNLVGMKKTLVFYRGRAPKGEKTNWVMHEFRLEGKFANYNLPKAAKDEWVVCRVFHKNTDVKKTSIPGLLRMSSIGDDLLDCSSLPPLMDPYPPYSNTNKTAAYSGDEFKGTTTNPLSSSSAKSPSDGYYLPSFSVHNNNHQLLIKPEDHRNYEIPINNNNYPSSNQASFSNHMGNNNNNTLLSSSSQPQIKVQNPNTPFQQNLFSDYSHLQQNRMNSSSWPSVAAASSGFGINNSQYHHDNILRTIAAKNNNECKMEQFSSCNQSVMSVSQDTGLSNDRNTDTSSVVSKQQDMGGNRALYEDLEGPSSVAPLSDLECLWDDY* 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g1929 433 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 7 359 - -
Dod01g1929 433 Pfam No apical meristem (NAM) protein 17 142 IPR003441 GO:0003677|GO:0006355
Dod01g1929 433 PANTHER NAC DOMAIN-CONTAINING PROTEIN 87 7 359 - -
Dod01g1929 433 SUPERFAMILY NAC domain 13 168 IPR036093 GO:0003677|GO:0006355
Dod01g1929 433 MobiDBLite consensus disorder prediction 382 401 - -
Dod01g1929 433 ProSiteProfiles NAC domain profile. 16 167 IPR003441 GO:0003677|GO:0006355
Dod01g1929 433 Gene3D NAC domain 25 172 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g1929 Dod-Chr1 54362743 54365340 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g1929 1 201 NAC Transcription Factor Family AT5G18270 77.619 8.85e-114 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Dod01g1929 NAM 6.7e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g1929 - - aprc:113861501 607.831
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g1929 01 54362743 54365340 Dod01g1929 01 54362743 54365340 ECH