Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g1927 ATGGGATCCCCAGAATCAAATTTGCCACCTGGTTTTAGGTTCCACCCAACTGATGAGGAGCTCATTCTTCACTATCTCCGGAAAAAAGTAGCCTCCATACCCTTGCCTGTTTCCATCATTGCTGAGGTTGATATCTACAAATTGGATCCATGGGAATTACCAGCTAAGGCTGCCTTTGGGGAGAAAGAATGGTACTTCTTCAGCCCAAGGGACCGCAAGTATCCCAATGGAGCAAGGCCAAACAGGGCAGCTGCTTCAGGTTATTGGAAGGCAACTGGCACGGACAAGACCATAGTGGCATCATTGCCAGGAGGGGTACGCCAGGATAGCATTGGTGTCAAGAAGGCTCTTGTGTTCTACAAAGGGAGGCCCCCAAAGGGTGTCAAGACCAATTGGATCATGCATGAGTATCGCCTGGTGGGCAACAATAGACCCATTAAGCTCAAAGACACCTCCATGAGGTTGGATGACTGGGTTCTGTGCCGGATTTACAAGAAGTCCAAATTCACAATATCTCCAACGGAGGCATCAACAGTGGTAGGTGATCAAGATCAAGCCGGAGAGCATCTTTTCAAGGACACCCTTATGCCAATCTCAAAGGGTCCAACCCGTCCTCCACCACCACCACCACCACAGAACACACTCATGTCTCAGAAATCCGTGTCCTTCTCCAACCTCTTGGATGCCATGGACTACTCCATGCTCAGCAGCATCTTATCTGAGAATAACCATTCCAACCCACAAGGGATTATTGGATCATCAACAAGTTCAGGATTCAACACTGGGAGCATGGATCATCAGCATCAGCAGCACTCCCAAATCAACACCACCTACATGTTTCAGAAAAACCCTCCATTGAACCCTTCATCAGTCAATAACAACATGGAAAACATCATAAGGCCCAAGCGCCAGCTTCCAGACCTAGATGAGGAAACTCTGTTGCACCCATCAAAGAAGTACCTCATGAGTTCCTCTTGCAGCTTCCCTAACAACAACAACCCACAATACGAGAACCCACAATGGAACTACCTCATGAAGCAATCTTTGTTGAACCAGCAGTTACTTCTTGGTCCTCATCTTCGATTTTAA 1089 0.4757 MGSPESNLPPGFRFHPTDEELILHYLRKKVASIPLPVSIIAEVDIYKLDPWELPAKAAFGEKEWYFFSPRDRKYPNGARPNRAAASGYWKATGTDKTIVASLPGGVRQDSIGVKKALVFYKGRPPKGVKTNWIMHEYRLVGNNRPIKLKDTSMRLDDWVLCRIYKKSKFTISPTEASTVVGDQDQAGEHLFKDTLMPISKGPTRPPPPPPPQNTLMSQKSVSFSNLLDAMDYSMLSSILSENNHSNPQGIIGSSTSSGFNTGSMDHQHQQHSQINTTYMFQKNPPLNPSSVNNNMENIIRPKRQLPDLDEETLLHPSKKYLMSSSCSFPNNNNPQYENPQWNYLMKQSLLNQQLLLGPHLRF* 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g1927 362 Gene3D NAC domain 17 170 IPR036093 GO:0003677|GO:0006355
Dod01g1927 362 ProSiteProfiles NAC domain profile. 8 166 IPR003441 GO:0003677|GO:0006355
Dod01g1927 362 PANTHER NAC TRANSCRIPTION FACTOR 56 6 217 - -
Dod01g1927 362 SUPERFAMILY NAC domain 5 166 IPR036093 GO:0003677|GO:0006355
Dod01g1927 362 Pfam No apical meristem (NAM) protein 9 139 IPR003441 GO:0003677|GO:0006355
Dod01g1927 362 PANTHER OS01G0104200 PROTEIN 6 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g1927 Dod-Chr1 54316949 54318357 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g1927 4 362 NAC Transcription Factor Family AT3G04070 50.275 1.50e-100 299
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Dod01g1927 NAM 5.9e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g1927 - - gmx:100301906 525.013
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g1927 01 54316949 54318357 Dod01g1927 01 54316949 54318357 ECH