LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dod01g1921	ATGGTTGGTGCAGTAAAATCAGCAATTGGTGATGGGGTGTTGACTTTCATGTGGGTGTTCTGTTCCTCCATGCTTGGGATAGCTTCAAGCTCCATAACAAGGGCCCTTGACATTCAACACATATCTTACAATGGCTTCCCTTACCCTTCATTTTTCGTCACCACTTTCCTCGTGTTCCTCCTTGTCTTTATCTTCACCATCATTGGCAATGCCTTGGGTGGTGCCAGCTTCAACCCAACCGGCACCGCTTCCTTCTACGCCGTTGGTCTCGGCTCTGACACACTCTTCTCAATGGCTCTTCGTTTCCCTGCTCAGGCTCTTGGTGCTGCGGGTGGGGCATTGGCGATTATGGAGGTGATTCCCTCGAAATACAAGCACATGATGGGGGGACCATCCTTGAAAGTGGACATACACACTGGGGCTGTTGCTGAAGGAGTGTTGACATTTGCGATCACTTTTGCTGTCCTCTTCATCATCCTCAAGGGCCCTCGTAGTGAGTTGTTGAAGACTTGGCTTCTCGCCATGTCAACTGTGGCTTTGATCATGGTTGGATCTGCTTACACCGGCCCATCCATGAATCCTGCCAATGCCTTTGGTTGGGCATACTTAAACAATTGGCACAACACATGGGACCAATTCTATGTTTACTGGATTTGCCCCTTTGCCGGAGCAATATTGGCTGCTTGGTTGTTCCGTGCCATCTTCCCCCCACCACCACCAGCAGAACTAAAACAGAAGAAATCGTGA	747	0.4967	MVGAVKSAIGDGVLTFMWVFCSSMLGIASSSITRALDIQHISYNGFPYPSFFVTTFLVFLLVFIFTIIGNALGGASFNPTGTASFYAVGLGSDTLFSMALRFPAQALGAAGGALAIMEVIPSKYKHMMGGPSLKVDIHTGAVAEGVLTFAITFAVLFIILKGPRSELLKTWLLAMSTVALIMVGSAYTGPSMNPANAFGWAYLNNWHNTWDQFYVYWICPFAGAILAAWLFRAIFPPPPPAELKQKKS*	249

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dod01g1921	248	SUPERFAMILY	Aquaporin-like	5	243	IPR023271	-
	Dod01g1921	248	PANTHER	AQUAPORIN SIP1-1	3	247	-	-
	Dod01g1921	248	Gene3D	Glycerol uptake facilitator protein.	3	241	IPR023271	-
	Dod01g1921	248	PRINTS	Major intrinsic protein family signature	214	234	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Dod01g1921	248	PRINTS	Major intrinsic protein family signature	6	25	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Dod01g1921	248	PRINTS	Major intrinsic protein family signature	143	161	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Dod01g1921	248	PRINTS	Major intrinsic protein family signature	58	82	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Dod01g1921	248	PRINTS	Major intrinsic protein family signature	97	116	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Dod01g1921	248	PRINTS	Major intrinsic protein family signature	174	196	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Dod01g1921	248	Pfam	Major intrinsic protein	5	231	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Dod01g1921	248	PANTHER	AQUAPORIN SIP1-1	3	247	IPR044222	GO:0015250

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dod01g1921	Dod-Chr1	54219172	54224717	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dod01g1921	4	248	Major Intrinsic Protein MIP	AT5G18290	56.098	6.07e-86	254

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Dod01g1921	K09875		-	gmx:100792787	432.95

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Dod01g1921	01	54219172	54224717	Dod01g1921	01	54219172	54224717	ECH
	Dod01g1921	01	54219172	54224717	Dod02g2028	02	37421443	37424184	PCT