Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g1894 ATGAGTTTTCAAGACATCCAAGGTGGTCCCAGTCCAGCCGCTCGCCGGAGCCAGTCACCGTCTCAGGCCGTCGCCGCCGGAATCTTCCAAATCAACACCGCCGTCGCCACTTTCCGGCGTCTCGTCGATGCCCTTGGAACCGTTAAAGACACTTCCGAGCACCGTCAGAAGCTGCACAATACGAGGCAGAGGATATTGCAGCTGGTGAAGGATACCTCTGCTAAGCTCAAATCCTTGAGTGAATCTGATCGTGATGCTGATACCAATCAGGCTAGTCAGAAAATTGAAGATGCTAAGCTAGCAAGAGATTTCCAGACCACATTACAGGAATTCCAGAAAGTGCAGCAGCTTGCTTCTCAGCGTGAATCAAGTTACACCCCTGCAGCTCCTCCTCCTTCTTTACCAACAAGCTCTGGCTCTGGTGAAGAATCAGTTGAGCAAGACCAGGAAAGCCAACCTTTTGTCAGAGAGCAAAGAAGGCAAGAGATACGTCTATTGGATAATGAAATCTCCTTCAACGAGGCCATGATTGAAGAAAGAGATCAGGGTATTACAGAAGTGGAAGAACAAATTAGACAAGCAAATGAAATGTTCAAGGACCTGGCTGTTCTGGTTGACCAGCAGGGGGTTGTTATTGATGACATCCAGTCAAACATTGATAATTCTGCTGGTGCAACAACCCAAGGTAGAGTACAGCTAGCAAAGGCTTCCAAGAGTGTGAAATCCAGAACCTCATGGTGTTGGTGGGTGCTTGTAATTGTTGTGGTGGTCGTGGTCATCTTACTTATTGTACTCATTATTTAG 804 0.4751 MSFQDIQGGPSPAARRSQSPSQAVAAGIFQINTAVATFRRLVDALGTVKDTSEHRQKLHNTRQRILQLVKDTSAKLKSLSESDRDADTNQASQKIEDAKLARDFQTTLQEFQKVQQLASQRESSYTPAAPPPSLPTSSGSGEESVEQDQESQPFVREQRRQEIRLLDNEISFNEAMIEERDQGITEVEEQIRQANEMFKDLAVLVDQQGVVIDDIQSNIDNSAGATTQGRVQLAKASKSVKSRTSWCWWVLVIVVVVVVILLIVLII* 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g1894 267 Coils Coil 177 204 - -
Dod01g1894 267 MobiDBLite consensus disorder prediction 113 127 - -
Dod01g1894 267 SUPERFAMILY t-snare proteins 19 229 IPR010989 GO:0016020|GO:0016192
Dod01g1894 267 SMART tSNARE_6 169 236 IPR000727 -
Dod01g1894 267 Gene3D - 11 130 - -
Dod01g1894 267 PANTHER SYNTAXIN-22-LIKE 14 266 - -
Dod01g1894 267 PANTHER SYNTAXIN 14 266 IPR045242 -
Dod01g1894 267 CDD SNARE_Qa 177 235 - -
Dod01g1894 267 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 174 236 IPR000727 -
Dod01g1894 267 Pfam SNARE domain 211 262 IPR000727 -
Dod01g1894 267 Pfam Syntaxin-like protein 25 125 IPR006011 GO:0016020
Dod01g1894 267 MobiDBLite consensus disorder prediction 113 156 - -
Dod01g1894 267 Gene3D - 167 267 - -
Dod01g1894 267 SMART SynN_4 8 123 IPR006011 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g1894 Dod-Chr1 53815138 53818645 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g1894 1 253 SNARE and Associated Proteins AT5G46860 56.809 4.14e-94 276
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g1894 01 53815138 53818645 Dod01g1894 01 53815138 53818645 ECH