Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g1888 ATGATGAATCCTTTTGCGGCATCATCATCACCATCGTCCAAGTCCAAGAAGAAGCAAACGACGGCCAAAACGGCGACGCCACAAGAGCAGAACCAGCATGAAACGGCGTGGGGAGGGAGGTACCTCGGGGTGAGGAGGAGGCCGTGGGGGAGGTACGCGGCGGAGATTCGAGACCCCTCCACGAAGGAGAGGCACTGGCTGGGCACCTTCGACACCGCGGAGGAGGCCGCCCTAGCATACGACAGGGCGGCCCGCTCCATGCGCGGGTCGCGTGCCCGCACCAACTTCGTGTACCCTGACACCCCACCGGGGTCGTCAGTGACACCAATCCTATCACCCGATCAACTACAGTCCCAGACTCACAATCACCACCACCACCATGTCCATGACCTATCCTCACTCTTTCCTTCCAACCAACTCACCCAACAACCCGACCCGAATCCGACACTCGACCCGGTCACGTTGTTGGAGGTGGCAGCGGGTGGTAACAACAACTGGGGCTATAGTTACGGTTATAGTAATGATCACTACAATAATAATAATAATATTGATAATTACTATAACTGTAATTATAATGAAGGTGCAGGTGGCACGGTGGAAGGTTCCAATTTGGGGCACGTGCTTTTTGAGGATGGTGGCACTAGCACTACTAGTACAAGCACTAGCGCAAGCACCATAGAGCTTCCTCCTTTGCCACCAGATATTACTAGCTCCGCGGGTTATGAAATGGATCAGGATCAAGCAGGGTATGGGTATTATTGGGAGCACAACAACGCTGGGGATTATGTGCATGGTCCAATGTTCAGCGCAATGCCCTCTGTGTCAGAGAATGTGGCAGCAACTACTGAGGGTCTTGATTCGGGGAGCTCCTCTTATTTCTTCTGA 885 0.5345 MMNPFAASSSPSSKSKKKQTTAKTATPQEQNQHETAWGGRYLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAALAYDRAARSMRGSRARTNFVYPDTPPGSSVTPILSPDQLQSQTHNHHHHHVHDLSSLFPSNQLTQQPDPNPTLDPVTLLEVAAGGNNNWGYSYGYSNDHYNNNNNIDNYYNCNYNEGAGGTVEGSNLGHVLFEDGGTSTTSTSTSASTIELPPLPPDITSSAGYEMDQDQAGYGYYWEHNNAGDYVHGPMFSAMPSVSENVAATTEGLDSGSSSYFF* 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g1888 294 MobiDBLite consensus disorder prediction 1 35 - -
Dod01g1888 294 MobiDBLite consensus disorder prediction 94 131 - -
Dod01g1888 294 ProSiteProfiles AP2/ERF domain profile. 40 97 IPR001471 GO:0003700|GO:0006355
Dod01g1888 294 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 5 294 - -
Dod01g1888 294 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR LEP 5 294 - -
Dod01g1888 294 Pfam AP2 domain 41 89 IPR001471 GO:0003700|GO:0006355
Dod01g1888 294 SMART rav1_2 40 103 IPR001471 GO:0003700|GO:0006355
Dod01g1888 294 MobiDBLite consensus disorder prediction 99 118 - -
Dod01g1888 294 Gene3D AP2/ERF domain 39 98 IPR036955 GO:0003700|GO:0006355
Dod01g1888 294 SUPERFAMILY DNA-binding domain 40 97 IPR016177 GO:0003677
Dod01g1888 294 MobiDBLite consensus disorder prediction 213 227 - -
Dod01g1888 294 PRINTS Ethylene responsive element binding protein signature 63 79 IPR001471 GO:0003700|GO:0006355
Dod01g1888 294 PRINTS Ethylene responsive element binding protein signature 41 52 IPR001471 GO:0003700|GO:0006355
Dod01g1888 294 MobiDBLite consensus disorder prediction 213 232 - -
Dod01g1888 294 MobiDBLite consensus disorder prediction 1 39 - -
Dod01g1888 294 CDD AP2 40 96 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g1888 Dod-Chr1 53756983 53758227 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g1888 12 278 AP2-EREBP Transcription Factor Family AT5G13910 41.636 1.16e-49 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Dod01g1888 AP2 2e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g1888 K09286 - gmx:100809600 238.039
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g1888 01 53756983 53758227 Dod01g1888 01 53756983 53758227 ECH