Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g1880 ATGAAAACGGTTAATATCCTCTCCGTACTGTCCACATCAGCAAATTCCGTATTGTACACTTTAGCCCTAAAAACGCCAAATTTGGAAAGGGATCACGAGTATAAAGATCCATCTGATAAGTTGCATAAGGTTTTTTGGAGAGGAAAGGATAGACAGGTGGTTCATATGAGGGAAGAGGGAGGGGGATTGTGGGTCAATCTTGATTTCCCAATATTAGGAGGAGCTGCAGGAGCCGTGGCATTGGTAGGGATAGTTATAATACTCATATCGTTTTGTCTGTTTCACAAGAGAGGTGTTTCAAGGACTTCAGAGACAGCGTCTTCTGATCCTTCCCAAGTGGAAAGACATGGTGCAATTGAGTTGTCAATAAGGGATGCTAGGCGTTTTGAGATGGAGGAACTATCTCTGGCCACCAAAAACTTCAGTGACAAAAACTTGATTGGGGAAGGGAAATTTGGGGAAGTTTACAAGGGTTTACTTCAAGATGGGATTCTTGTGGCCATCAAAAAGCGCCGGGGACTCGCTAGCCAGGACTTTGTTGATGAGGTACGCTATCTCTCATCTATTCACGATCGGAATCTTGTAACTCTTTTAGGCTACTGCCAGGAAAACAATCTACAGTTTCTTATATATGAATATGTGCCTAACGGAAGCGTCTCCAGCCACTTGTATGGCGCTGGTCAACAATCGGGAGAGAAGCTAGAATTCAAGCATAGACTTTCAATAGCTCAAGGTGCAGCTAAAGGTTTGGGTCATCTTCACTCCTTGAGTCCCCGTTTGGTGCACAAGGATTTCAAAACAGCAAATGTTCTTGTGGATGAAAACTTCATAGCTAAGGTTGCTGATGCAGGACTTCGTAATTTTTTTGGGAGAGTCGAGATTGCAGGACCATCTTCTCAAGTGGCAGCGGATGAGATATTCCTTGCTCCTGAGGTGAGGGAGTTCAGGCGATTTTCTGAAAAGAGTGATGTTTACAGCTTTGGGGTATTTTTGCTGGAATTGTTATGCGGGAAGGAAGCAACAGAATCAACCTCTCTGGACCCTAACCAAAATCTGGTTGAATGGGTCCAAAGTAATCAAGACCGTGGCATTATGTCTCACATCATTGATCAAAGATTGGGGAGTAGTTTTACCGCTGAAGGCATGGAAGATTTCATCCTGCTGATAGTGAGGTGTTTAGATCCTTCAAGTGAGAGGCGACCTGCCATGAGCGATGTGGCTATGGAGCTTGATCGGATATATGCGAAAGAAATGAACTTGACAACAATCATGGGTGTTACTCTTGGAAGTCAATTATTCAAATCAACATCATCATAA 1317 0.4351 MKTVNILSVLSTSANSVLYTLALKTPNLERDHEYKDPSDKLHKVFWRGKDRQVVHMREEGGGLWVNLDFPILGGAAGAVALVGIVIILISFCLFHKRGVSRTSETASSDPSQVERHGAIELSIRDARRFEMEELSLATKNFSDKNLIGEGKFGEVYKGLLQDGILVAIKKRRGLASQDFVDEVRYLSSIHDRNLVTLLGYCQENNLQFLIYEYVPNGSVSSHLYGAGQQSGEKLEFKHRLSIAQGAAKGLGHLHSLSPRLVHKDFKTANVLVDENFIAKVADAGLRNFFGRVEIAGPSSQVAADEIFLAPEVREFRRFSEKSDVYSFGVFLLELLCGKEATESTSLDPNQNLVEWVQSNQDRGIMSHIIDQRLGSSFTAEGMEDFILLIVRCLDPSSERRPAMSDVAMELDRIYAKEMNLTTIMGVTLGSQLFKSTSS* 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g1880 438 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 71 436 - -
Dod01g1880 438 Pfam Protein tyrosine and serine/threonine kinase 145 409 IPR001245 GO:0004672|GO:0006468
Dod01g1880 438 SUPERFAMILY Protein kinase-like (PK-like) 126 411 IPR011009 -
Dod01g1880 438 Gene3D Phosphorylase Kinase; domain 1 111 213 - -
Dod01g1880 438 ProSitePatterns Serine/Threonine protein kinases active-site signature. 260 272 IPR008271 GO:0004672|GO:0006468
Dod01g1880 438 Gene3D Transferase(Phosphotransferase) domain 1 214 426 - -
Dod01g1880 438 ProSitePatterns Protein kinases ATP-binding region signature. 147 170 IPR017441 GO:0005524
Dod01g1880 438 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 71 436 - -
Dod01g1880 438 ProSiteProfiles Protein kinase domain profile. 141 414 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g1880 Dod-Chr1 53608972 53615460 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g1880 71 425 Receptor kinase-like Gene Family AT3G46290 37.197 6.83e-62 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXa Dod01g1880 PK_Tyr_Ser-Thr 1.1e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g1880 - - gmx:100305436 596.275
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g1880 01 53608972 53615460 Dod01g1880 01 53608972 53615460 ECH