Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g1878 ATGTGTCGTTTTCTTCTTGTTCTTCTTCTTCAGTGTCTTCTCTTTGCGAACGCCCTTAACGCTTCGGTCCCGAGCGACGCATTGTCCCTTCTGGCCTTCAAAAACTCGGTCTCCTCTGACCCTTCGAACCTTCTAGAACAGTGGACCAACCACTCTTGCTCAAGCCTCTGCCGGTGGCGCGGAGTCACGTGCGGCGCAGCCAACCGAGTCGCCGCCCTGCACGTGACCGGCCTTCGCGGCGGCCAATTGGCTCCCTCCGTCGGAGACTTGTCTGAGCTTCGCGTCCTGTCCATTCCCGGAAACATGTTTTCCGGCGAGATTCCGGCAAGCCTCGGGAACCTGCGGCACCTCAAGTTTCTCGAGCTTCAAGGAAACAACCTCTCCGGCAAGGTCCCTTACCGGATTAATTATCTTCATTCACTTCAACACGTTAACCTCTCTGGCAACGCGTTCTCTGGTTCAATTCCCAGTAACATAATTGGGAGCGTGAGAACCGTTGATTTGTCGAATAACCAGTTCTCTGGCAAGATCCCGGTGGAAGGCTTCAACGGTTGCGATTCGTTGGTTCATCTGAAGCTGTCTCACAATTTTATAACCGGCGAAATTCCGCGGCAGATTGGGAAATGCAGGAACTTGAGGGCGCTTTTTGTTGATGGGAATATCTTGGAAGGTGGAATCCCTTCTGAGATTGGTTATCTTGCTGAACTCAGAGTTCTAGATGTTTCTAGAAACAGCCTTACAGGAAGGGTCCCAAAAGAGCTGGCTAATTGCTTGAAGCTGTCTGTGCTTGTGCTGACTGATTTGTCTGACGGGGGAACATTGGCGGATAGCTTTAGAGGAGAGTTCAATGCATTTGTTGGGCATGTTCCTCATGAATTGTTGTTGCTTTCCAGCTTGCAGGTTCTGTGGGCGCCGAGGGCGAATCTCGCCGGTCGGTTGCCGGTTGGCTGGACGGATTCTTGCTCCCTTAGAGTGCTCAATTTGGGGCAGAATTATGTCGCCGGCGCCGTGCCGGAGAGTTTGGGGATGTGTAGGAATTTAACCTTCTTGGACTTGAGTTCTAACAGTTTGGTGGGATATCTGCCTTCGCAGCAGCTTCGGGTTCCTTGTATGATCTACTTCAATGTCAGCAGGAATAATGTGTCTGGCACATTTGCAGGATTTGGGAACGAAAGCTGTCGCAGTAGTGGCGCCTCTGCTGCACAAGACGTTGAGTTCCTTGAATTGGAAGGCATTACTGATGCAGGCTTTAGTGTTTTTGTTTGGAGATTACTGAAGAATGCTGTCATTGGGTCAGGTTTAGGGGATACTATTGTGGTTAGCCATGATTTCAGTTGGAACAGTTTTGTTGGATCTTTACCTTTGTTCTCTCTCGGGGATAATCTTTTTACTGCAAATCGTAAAGTCTCTTACAGGCTGTTTCTCAATAATAATATGTTCAATGGGACTCTACCTTACCAGCTAGTTTCAAACTGTAATGATCTCAAGACATTGTCGGTTAACTTGAGTGTGAACCAAATGTCTGGTGGGGATTCGCAAGCGTTAATTCTGAATTGCCTGCAGTTGACAGATTTTGAAGCAGCATACAACCAGATTGGTGGTTCAATTGGACCTGGTATTGGTGACTTGGTGATGCTTCAGCGGCTCGATTTAAGTGGGAACAAACTAAATGGATCCCTGCCTGATCAACTGGGAAGCCTGAAAAGCATGAAATGGATGCTTCTAGGAGGAAACAATCTGACAGGGGAAATCCCTTACCAACTCGGTCAATTGGCTTCCCTTGCTGTTTTGAATCTGTCTCACAATGCTCTGTTTGGAACAATTCCAGCTAGTCTGTCAAATGCCACAAGTCTTGAGATTTTGTTGCTGGATCACAACAAGCTGTTTGGGGGAATTCCTTTATCTTTTTCTGCTCTTCCCAATCTTGTTCAACTAGATGTTTCTTTCAACAATCTTTCGGGTCATATTCCTCACCTTCAGCACCCAAACGATTGTGATTCCTATAAAGGGAATGAACACCTTCACTCTTGCCCTGATCCATTCTCAGACTCACCTGCTTCTCTTCCGGTCCCTCTTGAAGTCAAAAGATCTCACAAACAGAGGAAATTGAGGACATTGGTTATTGCTGTGGTGACTTCTGCTGCTGTGGTTCTCGTCGTACTTCTGGGGTTAGCATTGGTGATCATTTTTGGAAGGAGTAAATTGGGTCGGCTTAGCAGTCTTAGAAGGAGACAGGTAGTTACTTTTCAAGATGTTCCAACTGAATTGAGTTATGACATTGTGGTCACAGCTACTGGAAATTTCAGCATCCGATATCTAATTGGCACTGGGGGCTTCGGGTCAACTTACAAGGCAGAATTGTCCCCAGGTTTTCTCGTTGCCATAAAGAGGTTGGCCATAGGTAGATTTCAGGGCATTCAGCAGTTCGAAACGGAAATAAGGACACTGGGGAGGATTCGGCACAAGAACCTTGTGACACTTATTGGCTATTATGTAAGCGAGGCTGAAATGTTCTTAATTTATAACTACCTTTCTGGCGGGAACCTTGAAGCTTTCATACACGACAGGTCAGGGAAAAATGTGCAGTGGCCGGTTATTTACAAGATAGCAAAAGACATAGCAGAGGCCCTTGCTTTCCTTCATTATTCGTGTGTTCCTCGCATAGTACACCGGGATATCAAGCCTAGCAACATACTACTTGATGAAGATCTTAATGCATACCTTTCTGACTTCGGCTTGGCTAGGTTGCTAGAGGTATCTGAGACCCATGCCACTACTGATGTGGCAGGCACATTTGGTTATGTTGCACCTGAATATGCCACCACTTGCAGGGTCTCCGACAAAGCAGATGTTTACAGCTTTGGTGTAGTATTATTAGAATTGATGTCGGGAAGGAAGTCACTTGATCCATCATTTTCTGAATATGGGAATGGCTTCAATATTGTGCCATGGGCCAAGTTGCTAATGACTGAAGGTCGTTGCTCTGAGCTATTTTCATCTGCTTTGTGGGAAGCAGGGCCTAAGGATAAGTTATTGGGACTTCTAAAGCTTGCATTAACATGCACAGTGGAAACTCTCTCTATTCGGCCATCAATGAAGCAGGTGCTTGAGAGATTGAAACAACTGAAAAATTGA 3135 0.4648 MCRFLLVLLLQCLLFANALNASVPSDALSLLAFKNSVSSDPSNLLEQWTNHSCSSLCRWRGVTCGAANRVAALHVTGLRGGQLAPSVGDLSELRVLSIPGNMFSGEIPASLGNLRHLKFLELQGNNLSGKVPYRINYLHSLQHVNLSGNAFSGSIPSNIIGSVRTVDLSNNQFSGKIPVEGFNGCDSLVHLKLSHNFITGEIPRQIGKCRNLRALFVDGNILEGGIPSEIGYLAELRVLDVSRNSLTGRVPKELANCLKLSVLVLTDLSDGGTLADSFRGEFNAFVGHVPHELLLLSSLQVLWAPRANLAGRLPVGWTDSCSLRVLNLGQNYVAGAVPESLGMCRNLTFLDLSSNSLVGYLPSQQLRVPCMIYFNVSRNNVSGTFAGFGNESCRSSGASAAQDVEFLELEGITDAGFSVFVWRLLKNAVIGSGLGDTIVVSHDFSWNSFVGSLPLFSLGDNLFTANRKVSYRLFLNNNMFNGTLPYQLVSNCNDLKTLSVNLSVNQMSGGDSQALILNCLQLTDFEAAYNQIGGSIGPGIGDLVMLQRLDLSGNKLNGSLPDQLGSLKSMKWMLLGGNNLTGEIPYQLGQLASLAVLNLSHNALFGTIPASLSNATSLEILLLDHNKLFGGIPLSFSALPNLVQLDVSFNNLSGHIPHLQHPNDCDSYKGNEHLHSCPDPFSDSPASLPVPLEVKRSHKQRKLRTLVIAVVTSAAVVLVVLLGLALVIIFGRSKLGRLSSLRRRQVVTFQDVPTELSYDIVVTATGNFSIRYLIGTGGFGSTYKAELSPGFLVAIKRLAIGRFQGIQQFETEIRTLGRIRHKNLVTLIGYYVSEAEMFLIYNYLSGGNLEAFIHDRSGKNVQWPVIYKIAKDIAEALAFLHYSCVPRIVHRDIKPSNILLDEDLNAYLSDFGLARLLEVSETHATTDVAGTFGYVAPEYATTCRVSDKADVYSFGVVLLELMSGRKSLDPSFSEYGNGFNIVPWAKLLMTEGRCSELFSSALWEAGPKDKLLGLLKLALTCTVETLSIRPSMKQVLERLKQLKN* 1045
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g1878 1044 Gene3D Ribonuclease Inhibitor 437 685 IPR032675 -
Dod01g1878 1044 Gene3D Ribonuclease Inhibitor 21 80 IPR032675 -
Dod01g1878 1044 PRINTS Leucine-rich repeat signature 591 604 - -
Dod01g1878 1044 PRINTS Leucine-rich repeat signature 546 559 - -
Dod01g1878 1044 SUPERFAMILY Protein kinase-like (PK-like) 746 1039 IPR011009 -
Dod01g1878 1044 Pfam Protein kinase domain 773 969 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dod01g1878 1044 SUPERFAMILY L domain-like 286 661 - -
Dod01g1878 1044 SUPERFAMILY RNI-like 76 383 - -
Dod01g1878 1044 SMART LRR_typ_2 138 162 IPR003591 -
Dod01g1878 1044 SMART LRR_typ_2 639 661 IPR003591 -
Dod01g1878 1044 SMART LRR_typ_2 233 257 IPR003591 -
Dod01g1878 1044 SMART LRR_typ_2 543 567 IPR003591 -
Dod01g1878 1044 SMART LRR_typ_2 591 615 IPR003591 -
Dod01g1878 1044 Pfam Leucine rich repeat N-terminal domain 24 64 IPR013210 -
Dod01g1878 1044 ProSitePatterns Protein kinases ATP-binding region signature. 774 796 IPR017441 GO:0005524
Dod01g1878 1044 Gene3D Transferase(Phosphotransferase) domain 1 844 1044 - -
Dod01g1878 1044 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 6 1044 - -
Dod01g1878 1044 SMART serkin_6 768 1043 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dod01g1878 1044 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE RPK2 6 1044 - -
Dod01g1878 1044 Pfam Leucine rich repeat 163 220 IPR001611 GO:0005515
Dod01g1878 1044 Gene3D Ribonuclease Inhibitor 81 278 IPR032675 -
Dod01g1878 1044 Gene3D Ribonuclease Inhibitor 279 413 IPR032675 -
Dod01g1878 1044 CDD STKc_IRAK 774 1042 - -
Dod01g1878 1044 ProSitePatterns Serine/Threonine protein kinases active-site signature. 888 900 IPR008271 GO:0004672|GO:0006468
Dod01g1878 1044 Gene3D Phosphorylase Kinase; domain 1 731 843 - -
Dod01g1878 1044 ProSiteProfiles Protein kinase domain profile. 768 1044 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g1878 Dod-Chr1 53548450 53552996 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g1878 4 1043 Receptor kinase-like Gene Family AT3G02130 43.360 0.0 800
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XV Dod01g1878 Pkinase 5e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g1878 - - gmx:100795047 1570.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g1878 01 53548450 53552996 Dod01g1878 01 53548450 53552996 ECH