Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g1870 ATGGAGGTGCAGGACCCATCCCAGCAGCCTATACTACAAGGCAATGTTGAGAGAAAAAGACATTATAGAGGAGTTAGGCAGAGGCCATGGGGAAAATGGGCAGCCGAAATCCGAGACCCTAAAAAGGCTGCTAGAGTGTGGCTTGGCACCTTTGACACGGCAGAGGCTGCAGCAGCTGCTTATGATGCCGCTGCCTTGAGATTCAAAGGCACCAAAGCCAAGCTCAACTTCCCTGAACGTGTTGCTGCTGCTTCTTCACCAATATCATCATCACCTTACAATAATTATGCTTCAGCTGCCTCAGCACCTCATCCTGCACCACCACATCTGGCGCCGGTACCACAGGTTTATCAGCCTCTTCCTCCTCCTCCTCCCTTTCCTCAGCAGTATCATCATCATCATCCCTTGTCATCATCATCAAATGAAGGGTTCCCAAACCTAATGCAGTATGCGCAGTTGCTTTGGAGTAGGGATGATGATGATTTACAACGTGCTGCTTCAGGCCTTTATTATCGCAACAATAATGACCCTTTTAGTTATAACTCATCATCAGTTTCAGCTTTTTCTTCTTCAGCTTCTGAGGTTTTGCCTGATCAACAGCATGTTGGAGATCATGGCATGAGTGCTCCCAAGGGAGATTATGGTTCTTGTGGTTTTAATTATTTTTTTGATGATAAAGGGAGTGGTTTTGATGACCGGAATTGA 705 0.4638 MEVQDPSQQPILQGNVERKRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAAAAYDAAALRFKGTKAKLNFPERVAAASSPISSSPYNNYASAASAPHPAPPHLAPVPQVYQPLPPPPPFPQQYHHHHPLSSSSNEGFPNLMQYAQLLWSRDDDDLQRAASGLYYRNNNDPFSYNSSSVSAFSSSASEVLPDQQHVGDHGMSAPKGDYGSCGFNYFFDDKGSGFDDRN* 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g1870 234 ProSiteProfiles AP2/ERF domain profile. 21 78 IPR001471 GO:0003700|GO:0006355
Dod01g1870 234 PANTHER DNA-BINDING DOMAIN 7 212 IPR044808 GO:0003700|GO:0009873
Dod01g1870 234 MobiDBLite consensus disorder prediction 105 130 - -
Dod01g1870 234 PANTHER AP2/ERF DOMAIN-CONTAINING TRANSCRIPTION FACTOR-LIKE PROTEIN ISOFORM 2 7 212 - -
Dod01g1870 234 SUPERFAMILY DNA-binding domain 21 79 IPR016177 GO:0003677
Dod01g1870 234 Gene3D AP2/ERF domain 20 80 IPR036955 GO:0003700|GO:0006355
Dod01g1870 234 MobiDBLite consensus disorder prediction 96 142 - -
Dod01g1870 234 MobiDBLite consensus disorder prediction 1 27 - -
Dod01g1870 234 SMART rav1_2 21 84 IPR001471 GO:0003700|GO:0006355
Dod01g1870 234 CDD AP2 21 79 IPR001471 GO:0003700|GO:0006355
Dod01g1870 234 Pfam AP2 domain 21 70 IPR001471 GO:0003700|GO:0006355
Dod01g1870 234 PRINTS Ethylene responsive element binding protein signature 44 60 IPR001471 GO:0003700|GO:0006355
Dod01g1870 234 PRINTS Ethylene responsive element binding protein signature 22 33 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g1870 Dod-Chr1 53471796 53474079 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g1870 4 117 AP2-EREBP Transcription Factor Family AT5G61890 60.169 2.83e-38 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dod01g1870 AP2 2.5e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g1870 - - ccaj:109818971 207.608
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g1870 01 53471796 53474079 Dod09g0079 09 1094294 1097137 ECH
Dod01g1870 01 53471796 53474079 Dod01g1870 01 53471796 53474079 ECH
Dod01g1870 01 53471796 53474079 Dod02g2890 02 61106273 61110457 PCT