Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g1857 ATGACGCCGTCGGGCTCAATGCCTTCGCCGCCGCGGGTCTCGAAATCGATGGCTTCGGTGGCTCTGACAATGCACTGTTTTCGAACGGGGGAAAGGCGCTTGAGGCCTCTTGAGGTTCTTCCTCCGGTGGGGGCGGTCCCCACGCTCTTCCAGAAGCGGGCGGCGCTTCGCCGGGGCTCTGGTGGGGCCGAGAATTTGGGGGGCTTGGAGGTTTTTGAGAGGAAATGGGGAGAGGGGGAGGTTGAGGAAGGTAGTATTGATGCTTCGGAGTTGAATTATGATTCTGATGAGAATTATGATGAGGATGGTAAGGTGGTGGTGGTTGAGGAGAGTGGGAATAATGGGGGAGGGAATGGGAATTTGAGCCTGAGTGGCTGTGTCAATGGTGGGGACCAGAAGGGGAAGAAGAAGGGGCTGCCGGCGAAGAATCTGATGGCCGAGAGGCGGCGCAGGAAGAAGCTCAATGATAGGTTGTACATGCTTAGGTCTGTTGTGCCGAAGATTAGCAAGATGGATAGGGCTTCAATCCTTGGGGATGCAATTGACTACTTGAGGGAGCTACTGCAGCGGATTAATGATCTTCACAATGAACTGGAGTCAACTCCCTCTGGCTCATTGTTGCAACCTTCTACAAGCATTCAACCTTTGACACCCACACCACAAACCCTTCCCAGCCGGGTCAAGGAGGAACTATATCCTGGCACCCTGCCAAGCCCCAAAAACCAACCTGCAAAGGTGGAAGTTCGGGTAAGGGAAGGGAGAGCTGTCAACATTCATATGTTTTGTACCCGCAGACCAGGTCTTCTTCTTTCTACCATGAGGGCTTTGGATAACCTCGGATTAGATGTTCAGCAGGCTGTGATTAGCTGTTTCAATGGTTTTGCTTTAGATGTCTTCAGAGCTGAGCAATGCATAGAAGGGCAGGATGTGCTTCCCGAGCAAATTAAAGCAGTTCTGCTGGATTCAGTGGGTTTCCATGGTATGATGTGA 990 0.5222 MTPSGSMPSPPRVSKSMASVALTMHCFRTGERRLRPLEVLPPVGAVPTLFQKRAALRRGSGGAENLGGLEVFERKWGEGEVEEGSIDASELNYDSDENYDEDGKVVVVEESGNNGGGNGNLSLSGCVNGGDQKGKKKGLPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIDYLRELLQRINDLHNELESTPSGSLLQPSTSIQPLTPTPQTLPSRVKEELYPGTLPSPKNQPAKVEVRVREGRAVNIHMFCTRRPGLLLSTMRALDNLGLDVQQAVISCFNGFALDVFRAEQCIEGQDVLPEQIKAVLLDSVGFHGMM* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g1857 329 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 31 329 - -
Dod01g1857 329 CDD ACT_UUR-ACR-like 258 299 - -
Dod01g1857 329 CDD bHLH_AtAMS_like 141 205 - -
Dod01g1857 329 SMART finulus 144 193 IPR011598 GO:0046983
Dod01g1857 329 Gene3D - 131 202 IPR036638 GO:0046983
Dod01g1857 329 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 138 187 IPR011598 GO:0046983
Dod01g1857 329 MobiDBLite consensus disorder prediction 199 224 - -
Dod01g1857 329 Pfam Helix-loop-helix DNA-binding domain 145 187 IPR011598 GO:0046983
Dod01g1857 329 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 141 205 IPR036638 GO:0046983
Dod01g1857 329 PANTHER BHLH TRANSCRIPTIONAL FACTOR 31 329 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g1857 Dod-Chr1 53292083 53296802 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g1857 34 308 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 67.266 5.65e-111 329
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dod01g1857 HLH 2.2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g1857 - - tcc:18601120 429.098
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g1857 01 53292083 53296802 Dod01g1857 01 53292083 53296802 ECH