Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g1846 ATGATGATGGATCAGGGGCAGCGAGGTAAGTTGGTTCTTCAGAAAACCGAGGCCTGTGGTTTTGTGGCAGGTGTTGGGGCTGAGCTTGGGCCTGTCACCGTGGCAGGGGACAACAACAGCAACACCACCACCACCAACAACAACAACAATAGGATAACTCACGGGTTGGGTCGGATCCACAACGACGTTCATCACCACCACCTTGGCCTTGTTCCAACGTTTGGGAATGTTCATAGGAAGAGGAGAATGGCTAGGATGAGGAGAAGGTCATCCACCACCATGATGGAGGTGCAGATGCACAGGATCAACCCCCTTCCTCTTCCTTCAAGGCACACACCACCACTGACACCACCAGCACCCCCTCCTCCTGCTGCAGGTGCTGCCCTTCCTTCCACCTCCTCGCACGTGCCAATCCCCGCTCTTTCGTCTCATAAACCCGTCAATACTCTTCAGCCCGCACGTGTAATCGATCATGGAAGGTTGAGATTCTTATTCCAAAAGGAGCTAAAGAACAGTGATGTTAGCTCCCTTAGGAGAATGGTATTACCAAAGAAAGCAGCAGAGGCTTTTCTTCCTGCTCTTGAATCAAAGGAAGGAATTCTTATCAGCATGGATGATCTAGATGGTCTTCATGTATGGAGTTTCAAGTACAGGTTTTGGCCAAATAACAATAGTCGGATGTACGTGCTTGAGAATACTGGGGAATTTGTTAACACACATGGCCTTCGCCTTGGAGATTCCATTATGGTTTACCAAGATAGTCAAAACCATAATTATGTCATTCAGGCAAAAAAGGCGTCTGAACAAGATGAATTTATGGAAGAAACTAGTGATATCACCAATGATATCTTCCTTAATGATTACGAGGTTATCAAACCCGGTTGCCTCAACTCAACCTTTCCTGCCGTGAATGACACAGGCATGTCATTCATATATGAGACTACCTTCTCAAATGATTCCCCACTCGATTTTCTGGGTGGATCAATGACAAATTTTTCAAGGATTGGACCAGTTGAAACTTTTGGCTCAGTTGAGAATTTGTCACTCGATGACTTCTATTAA 1062 0.4623 MMMDQGQRGKLVLQKTEACGFVAGVGAELGPVTVAGDNNSNTTTTNNNNNRITHGLGRIHNDVHHHHLGLVPTFGNVHRKRRMARMRRRSSTTMMEVQMHRINPLPLPSRHTPPLTPPAPPPPAAGAALPSTSSHVPIPALSSHKPVNTLQPARVIDHGRLRFLFQKELKNSDVSSLRRMVLPKKAAEAFLPALESKEGILISMDDLDGLHVWSFKYRFWPNNNSRMYVLENTGEFVNTHGLRLGDSIMVYQDSQNHNYVIQAKKASEQDEFMEETSDITNDIFLNDYEVIKPGCLNSTFPAVNDTGMSFIYETTFSNDSPLDFLGGSMTNFSRIGPVETFGSVENLSLDDFY* 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g1846 353 SUPERFAMILY DNA-binding pseudobarrel domain 163 262 IPR015300 -
Dod01g1846 353 Gene3D - 161 279 IPR015300 -
Dod01g1846 353 MobiDBLite consensus disorder prediction 107 127 - -
Dod01g1846 353 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 51 353 IPR044800 GO:0003700
Dod01g1846 353 Pfam B3 DNA binding domain 165 262 IPR003340 GO:0003677
Dod01g1846 353 CDD B3_DNA 163 265 IPR003340 GO:0003677
Dod01g1846 353 ProSiteProfiles B3 DNA-binding domain profile. 165 267 IPR003340 GO:0003677
Dod01g1846 353 SMART B3_2 165 267 IPR003340 GO:0003677
Dod01g1846 353 MobiDBLite consensus disorder prediction 106 145 - -
Dod01g1846 353 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR FUS3 51 353 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g1846 Dod-Chr1 53184018 53187674 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g1846 52 353 B3 DNA Binding Superfamily AT3G26790 47.463 6.33e-86 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Dod01g1846 B3 4.4e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g1846 - - gmx:100783961 455.677
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g1846 01 53184018 53187674 Dod01g1846 01 53184018 53187674 ECH