Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g1828 ATGGATAGGTTGGCATCCTTTGGTGGTAACATTAAGCTCCCCGTCGGGTACACATTCTGCCCTTCCGATGAGATTTTTGTCGCTTACTACCTGAAGAAGAAGGCCCTTTCTCGAAGAAACGATGTTGAGGTTGTCCCAGAGTTTGATGTGTTCAGCACTGAGCCTAAGAATCTGCCATCAGGTGGAAGGGTTTTCTTGGGCAACAAGTTCTTTTTCTGCGACCTCAAGGACCGTGTGTTTGAAAACACTGACAAAAGGGACGCTGGCTCTGGCCAGTGGAGAACTGCTGGGGATGCTAAGGACATCATTCTTGTTACCAAAAACAAGCTGGTTGGCAAAAGGAACAAGCTTGTGTTCTGGAGGAAGATAGGCACCGACTTCATCGAAACTAAGTGGGTTATGCATGAGTTCCGCCTCTTTCTCCCTGCGGCACTTCCCCACCCATCTCAGATGTCATCCTGGGCCGGGTATAAAATATTTCTCAAGAAGGATAGAAGGAGCAGCAAGAGGGTTAGGAACTCTTATGATGATGTGGAGCACTCTGACAGGGACGACAGTGATGAATTTGAGGAGGAAGAGGAGGAGGAGGAGGAGGATGAGGAACCCAGTGAAATGAATTTCGCACTGGAGAGTGGCAGCAACACAGGCCCTCCCTCCCCTAGTTCCTCTGATTCTGACTCAGTTACAAGCCAGTAA 696 0.4899 MDRLASFGGNIKLPVGYTFCPSDEIFVAYYLKKKALSRRNDVEVVPEFDVFSTEPKNLPSGGRVFLGNKFFFCDLKDRVFENTDKRDAGSGQWRTAGDAKDIILVTKNKLVGKRNKLVFWRKIGTDFIETKWVMHEFRLFLPAALPHPSQMSSWAGYKIFLKKDRRSSKRVRNSYDDVEHSDRDDSDEFEEEEEEEEEDEEPSEMNFALESGSNTGPPSPSSSDSDSVTSQ* 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g1828 231 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 13 170 - -
Dod01g1828 231 Pfam No apical meristem (NAM) protein 14 139 IPR003441 GO:0003677|GO:0006355
Dod01g1828 231 Gene3D NAC domain 22 167 IPR036093 GO:0003677|GO:0006355
Dod01g1828 231 MobiDBLite consensus disorder prediction 171 231 - -
Dod01g1828 231 ProSiteProfiles NAC domain profile. 13 162 IPR003441 GO:0003677|GO:0006355
Dod01g1828 231 SUPERFAMILY NAC domain 8 162 IPR036093 GO:0003677|GO:0006355
Dod01g1828 231 MobiDBLite consensus disorder prediction 207 231 - -
Dod01g1828 231 MobiDBLite consensus disorder prediction 181 205 - -
Dod01g1828 231 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 13 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g1828 Dod-Chr1 52838394 52840085 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g1828 9 163 NAC Transcription Factor Family AT5G13180 33.544 7.91e-22 89.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Dod01g1828 NAM 2.4e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g1828 - - ahf:112697144 202.986