Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g1792 ATGGAGTGGGATTGGAAAGAGTTTGCTTGGGATCCATCTGGGTTGGAGCTATCCAACCCTCCTGGCTGGGGAGTGCACAAGAATAACAATGATGCAGCTTCAGTGGATTTGAGGCTTGGTGAGGCTTCTGATTTGGTGGAGAAGCCAGCAGCAGGTAAAGAAAAGGAACCAACAGACTCACAAGCCGTGTCATCGCCACCTTCATCAAAGAGATCCCGTTTGCATAATGGGTCACAGAACATGTCTTGCTTGGTTGATGGATGCAACTCTGACCTTAGTGACTGCAGGGAGTATCATAGGCGCCATAGGGTCTGTGAAAAGCACTCCAAGACCCCTGTTGTGTTGGTAGGGGGGAAGCAGCAGAGGTTCTGCCAGCAATGCAGCAGGTTTCATTCACTTGGGGAGTTTGATGAGGTTAAGAGGAGTTGCAGGAAACGTCTTGATGGACATAACAGGCGCAGGAGGAAACCTCAGCCACCATCTTTTCTCATGACTACCGAGAAATTGATGTACAATTACAAAGGACCTAGAATCCTGCAATTTGGTAACCCTCAGGCATATGCAAACCCTGTTGTGAGAAACATGTGGCCAGCTGCAACGAAATCTGGAGCTGAAACTGGTTATGATCATCATAGATTTTTATACAGAATTGACAAGCATAGGCCGGACAAGGAACTTCTTCTCTGGCAAGATAATGGCCCAAAAGCAGGCAATGCTAATGAAGCAATGCCTGGAACCCCGATTCATCTGCCTATTGGTGGTGCCATTTCCCCATCAGCAAGCAGAAAATGCAGCCGGCCGAAGCCGCCTTCCGACAGCAAACCTGGATCTTTCGACTCAGGTTGTGCTCTCTATCTTCTGTCAACACTTCAAACACAAAGCTCAGAGGTGAGCCTGGTGCAGTCCAGCATCACCTGCCCAATGCCTTCAGGAGGAACTGTGCAATTTGGTGCAGCGGATGATTATTCATGCTCAGAAAGGGCTAAAGACAAGTCCTGCAATGGTCCAATGTTGGCTCTTGATGCAAACTCAACCAACCTTCATTGCAATGGGATGCTGCAAATGGGGCCTGATGGATTGGTTGAAAATGGGGATTCATTGACGCTTCCCTTTTTCTGGGAGTAG 1125 0.4844 MEWDWKEFAWDPSGLELSNPPGWGVHKNNNDAASVDLRLGEASDLVEKPAAGKEKEPTDSQAVSSPPSSKRSRLHNGSQNMSCLVDGCNSDLSDCREYHRRHRVCEKHSKTPVVLVGGKQQRFCQQCSRFHSLGEFDEVKRSCRKRLDGHNRRRRKPQPPSFLMTTEKLMYNYKGPRILQFGNPQAYANPVVRNMWPAATKSGAETGYDHHRFLYRIDKHRPDKELLLWQDNGPKAGNANEAMPGTPIHLPIGGAISPSASRKCSRPKPPSDSKPGSFDSGCALYLLSTLQTQSSEVSLVQSSITCPMPSGGTVQFGAADDYSCSERAKDKSCNGPMLALDANSTNLHCNGMLQMGPDGLVENGDSLTLPFFWE* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g1792 374 Pfam SBP domain 83 156 IPR004333 GO:0003677
Dod01g1792 374 PANTHER TRANSCRIPTION FACTOR SBP FAMILY-RELATED 26 374 - -
Dod01g1792 374 MobiDBLite consensus disorder prediction 41 55 - -
Dod01g1792 374 MobiDBLite consensus disorder prediction 256 276 - -
Dod01g1792 374 ProSiteProfiles Zinc finger SBP-type profile. 80 157 IPR004333 GO:0003677
Dod01g1792 374 SUPERFAMILY SBT domain 81 162 IPR036893 GO:0003677|GO:0005634
Dod01g1792 374 Gene3D - 74 144 IPR036893 GO:0003677|GO:0005634
Dod01g1792 374 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 26 374 IPR044817 GO:0003677
Dod01g1792 374 MobiDBLite consensus disorder prediction 58 77 - -
Dod01g1792 374 MobiDBLite consensus disorder prediction 36 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g1792 Dod-Chr1 51968152 51971421 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g1792 83 194 SBP-box Gene Family AT5G50670 60.177 1.83e-42 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Dod01g1792 SBP 1.5e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g1792 - - lja:Lj1g3v3847150.1 531.946
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g1792 01 51968152 51971421 Dod01g1792 01 51968152 51971421 ECH