Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g1700 ATGGCCTCTTCCAGCTACTCCAATTCTCCCTGTGCTGCCTGCAAGTTTTTGAGAAGGAAATGCATGCCAGATTGCATTTTTGCCACATATTTTCCCCCGGAAGAGCCTCAAAAGTTTGCCAATGTTCACAAGATATTTGGTGCAAGCAACGTTAGCAAACTTCTCAATGAAGTCCTACCCCACCAAAGGGAGGATGCAGTGAATTCTCTGGCCTATGAAGCTGAGGCACGGATAAAAGATCCTGTTTATGGCTGTGTTGGGGCCATCTCAGTGCTCCAAAGGCAAGTGATTAGGCTCCAAAAGGAACTAGATGCCACAAACGCAGATTTGATCCGCTATTCCTGCAATGAAATGCCAATGCAAGATGGGAGAAGGATGGGTGAAGGAGGAGGAAGCTCGTCTCTTGGTCAGTCTCCGGGCTATTATTATCCATCTCCTTGGAACAATGATGTTTGTGGGGATGGTTATCACAGAGGAGGTGACAACAATCTGTGA 495 0.4687 MASSSYSNSPCAACKFLRRKCMPDCIFATYFPPEEPQKFANVHKIFGASNVSKLLNEVLPHQREDAVNSLAYEAEARIKDPVYGCVGAISVLQRQVIRLQKELDATNADLIRYSCNEMPMQDGRRMGEGGGSSSLGQSPGYYYPSPWNNDVCGDGYHRGGDNNL* 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g1700 164 Pfam Lateral organ boundaries (LOB) domain 10 106 IPR004883 -
Dod01g1700 164 Coils Coil 89 109 - -
Dod01g1700 164 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
Dod01g1700 164 PANTHER LOB DOMAIN-CONTAINING PROTEIN 25 1 151 - -
Dod01g1700 164 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g1700 Dod-Chr1 49698833 49700989 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g1700 1 113 AS2 family AT5G63090 87.719 1.33e-68 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Dod01g1700 LOB 2.5e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g1700 - - var:108328620 298.516