LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dod01g1692	ATGATTTCCAAACACTATTACTCATCAAATCCCAGCTTCAACAACAACAACAACAAGAAGAAGAACCTATCATCATCATGGATTATTCTCTTCACCATAGTTCTCGTCTCATCTCTCTCCCACTCACTATCCGATCCAAGAATCTCAGAAGCGGGACTCTACTGTGGCACAACAAAAGCCCCACTGAAAGCCAACTACATCCCAAGCTTCACCAAAGAAATGGAGAGCCTCTCCCAGCAGGTCACCAACCACAACTTCGGCTCTCACTCGGTCAACATCTCAGGCTCCGTTCCCATCTACGGCTTGGCACAATGCTTCGGCGACCTCTCCCACACCGACTGCCTTCTCTGCTACGCCGCAAGCCGCACCAAACTCCCTCGCTGCCTCCCTTCCGTCTCCGCCCGCATCTACCTCGACGGATGCTTCCTTCGCTACGACAACTACAGCTTCTACTCGGAGGACACTGACCCTCTGAGGGACACCGCGAACTGCACCTCCCAGCATGGCGCGGAGGAGGATCGGACTCGGAGGTTGGAGCTTGAGAAGCGTGTTGGAAAAGTGGTTGATAGTGTGGCCGTGAAAGCTGCAACCAAGGGAGGTGGTGGGTTTGCAGTGGGAGAGGTTGAGGGCGTTTATGCCTTGGCACAGTGCTGGAACACTGTTGGGAGTGATGGGTGCAGAAACTGCTTGAGGAAAGCTGGGAACGAGGTGAGAGGGTGCTTGCCGAAGAGAGAAGGGAGGGCCTTGAATGCTGGGTGTTATTTGAGGTACTCAACGGAGAAGTTCTACAATGAAGATGCTGCAGCAGAGGGTGGAAATGGGCATTTTAGAAGAGGCGCCATAATAGCAACAGTCCTGGCAATTGCTGCAGTTATAATGCTCTCTCTCTCTGCCTTTTATGCAGCGTTCACAAAATTGTCGAAGTTAAAAAAAGAAAACAGTAGTCTTGGTCAGATTTCCTCTTCAATAAGGGAATCTAGTTTGAATTACAAATACGAAACTCTAGAGAAAGCCACGGATTATTTCAACCCTTCAAAAAAAATAGGCCAAGGAGGAGCTGGTTCAGTATTCAAAGGTACTCTCCCAAATGGGAATGTTGTTGCTGTTAAGAGATTGGTCTTCAATAACAGGCAATGGGTGGACGAGTTCTTCAATGAAGTGAATTTGATTAGTGGAATCGAACACAAGAACCTTGTCAAACTATTGGGTTGTAGCATTGAAGGCCCGGAGAGCCTCCTTGTGTACGAGTACCTTCCCAACAAGAGTTTAGATCAATTTATCTTTGAAAAGAACAAACCTCAGATTCTAAACTGGAAGCAGCGGTTTAATATCATTCTTGGAACAGCAGAAGGGCTTGCATATCTCCATGGAGGCTCTAAGAGAAGAATCATCCATCGAGACATCAAAAGCAGCAATGTTCTTCTGGACAAGAATCTCACTCCCAAGATTGCAGATTTTGGCCTTGCCCGGTGTTTTGCTACTGATAAGACACATTTGAGCACTGGAATAGCTGGAACACTAGGTTACATGGCTCCTGAGTACCTAGTTCGTGGACAACTAACCGATAAAGCTGATGTCTATAGTTTCGGAGTACTTGTTCTTGAGATTGTATGTGGCAGGAGGAATAATGTTTTCAGAGAGGACTCTGGTTCGCTTCTGCAAACAATTTGGAAACTGTACCGATCAAAAACATTGGCTGAAGCTGTTGATCCATCATTGGGAGATGATTTTCCACCAACCGAAGCATTAAGGGTGTTTCACATTGGATTGCTTTGCACACAAGCTTCTGCTTCACTGAGGCCATCCATGACCCAAGTTGTACACTTGTTAAGCAACACAAATGTAGATGTTCCTACACCAAGTCAACCCCCTTTCTTGAACACCGGAGTCCCAGACTCAGACAGCTCCACTAAGTCTTATAGCACAGGCAGTTTTGTATCAAATGCCTTAAAGAAGATTGGAGTGTCCAACAGCTTCTCAGAGTCCTCTAGCTCGCCCAGTTCAGATGGGCCTTCAAGAAGTAAAGAACCAATTATCCAAGCTTGA	2046	0.4677	MISKHYYSSNPSFNNNNNKKKNLSSSWIILFTIVLVSSLSHSLSDPRISEAGLYCGTTKAPLKANYIPSFTKEMESLSQQVTNHNFGSHSVNISGSVPIYGLAQCFGDLSHTDCLLCYAASRTKLPRCLPSVSARIYLDGCFLRYDNYSFYSEDTDPLRDTANCTSQHGAEEDRTRRLELEKRVGKVVDSVAVKAATKGGGGFAVGEVEGVYALAQCWNTVGSDGCRNCLRKAGNEVRGCLPKREGRALNAGCYLRYSTEKFYNEDAAAEGGNGHFRRGAIIATVLAIAAVIMLSLSAFYAAFTKLSKLKKENSSLGQISSSIRESSLNYKYETLEKATDYFNPSKKIGQGGAGSVFKGTLPNGNVVAVKRLVFNNRQWVDEFFNEVNLISGIEHKNLVKLLGCSIEGPESLLVYEYLPNKSLDQFIFEKNKPQILNWKQRFNIILGTAEGLAYLHGGSKRRIIHRDIKSSNVLLDKNLTPKIADFGLARCFATDKTHLSTGIAGTLGYMAPEYLVRGQLTDKADVYSFGVLVLEIVCGRRNNVFREDSGSLLQTIWKLYRSKTLAEAVDPSLGDDFPPTEALRVFHIGLLCTQASASLRPSMTQVVHLLSNTNVDVPTPSQPPFLNTGVPDSDSSTKSYSTGSFVSNALKKIGVSNSFSESSSSPSSDGPSRSKEPIIQA*	682

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dod01g1692	681	MobiDBLite	consensus disorder prediction	657	681	-	-
	Dod01g1692	681	Pfam	Protein tyrosine and serine/threonine kinase	345	610	IPR001245	GO:0004672\|GO:0006468
	Dod01g1692	681	Pfam	Salt stress response/antifungal	64	148	IPR002902	-
	Dod01g1692	681	Pfam	Salt stress response/antifungal	177	259	IPR002902	-
	Dod01g1692	681	CDD	STKc_IRAK	348	610	-	-
	Dod01g1692	681	MobiDBLite	consensus disorder prediction	618	641	-	-
	Dod01g1692	681	SUPERFAMILY	Protein kinase-like (PK-like)	326	641	IPR011009	-
	Dod01g1692	681	ProSiteProfiles	Protein kinase domain profile.	342	626	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dod01g1692	681	Gene3D	Transferase(Phosphotransferase) domain 1	418	619	-	-
	Dod01g1692	681	ProSiteProfiles	Gnk2-homologous domain profile.	158	262	IPR002902	-
	Dod01g1692	681	SMART	serkin_6	342	610	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dod01g1692	681	MobiDBLite	consensus disorder prediction	657	675	-	-
	Dod01g1692	681	PANTHER	CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3	38	674	-	-
	Dod01g1692	681	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	463	475	IPR008271	GO:0004672\|GO:0006468
	Dod01g1692	681	PANTHER	CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 42	38	674	-	-
	Dod01g1692	681	Gene3D	Phosphorylase Kinase; domain 1	301	417	-	-
	Dod01g1692	681	Gene3D	-	51	150	IPR038408	-
	Dod01g1692	681	Gene3D	-	163	262	IPR038408	-
	Dod01g1692	681	ProSiteProfiles	Gnk2-homologous domain profile.	48	150	IPR002902	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dod01g1692	Dod-Chr1	49288253	49292151	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dod01g1692	28	507	Receptor kinase-like Gene Family	AT5G40380	57.290	0.0	556

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Dod01g1692		PK_Tyr_Ser-Thr	2.6e-44	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Dod01g1692	-		-	gmx:100790404	1023.46