Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g1674 ATGGTTAGTGAAGACCAAAAACGGAGCCCCAGAAACCAAAAGAACCCTGCAACGGAGGGGAATGGCCAAAACCTGGACACCCTTTTCAGCCCGCGATTCAAATCGGCAGCCGCTATGGCCGGTTGGGATGAGGAGGCTCTGCTGCTCGCGAGCCTCATCGTCGAAGACACGCCTGATAGGGATTTCAAGCACAAGAGGCGCTCTGTCTTGAACTCCAAGACACCACCCACCAATTCAAGAAGGAAACGAAGAGCTCAGAGGAGTCCACAAGCAACCCCGGTGGCTGTTCTTGATCTTGATGGAGAAGAGACTCCTAGAAAGGATAGTAGCGATAAAAAGAAGAAAGAAAAGAAAACTTGCGGAAATGAGGCGAGTAAAGTAGAAGGGAATGAATTGAACGAGGAGAGATCTGGTGCCTATTCTTCCAGCTCAGCTCTTTCCTGCATTGATAAGCTCAGGGAGGAGCTCTCCTGCGCGATTTGTTTGGAGATATGCTTTGAGCCAAGTACCACTCCTTGTGGTCACAGCTTCTGTAGAAAATGTCTTCGGTCTGCCGCAGACAAGTGTGGCAAAAGGTGCCCCAAATGCAGGCAATTAATAAGCAATGGAAGGTCCTGCACTGTGAACACAGTTCTCTGGAACACAATACAGCTCCTGTTTCCGCAGGAAGTTGAAGCAAGGAAAGCAACCGGTGCCATAAACAGTCGAGAAGCAGCAGCTCAGTGCGCGAGTCCAGAGACAGCGTTTTACAACAACCTAAGGAATGGGAGCACAGAAGCATCAAATAGAGCATCAAGCAGAGGTGTGAGTTCTAGGAGAAGTGGTGGGGTGGTGGCAACAACACAGGACGAGGATGCTGCAGCATTGGCTAGAAGGTTGCAAAGAGAGACTGGTGGTGGTAATTCAAGGAACCAAAGAGGGAGGTCATCAAGAAGAGGGATTTCTAGGAGCCAGGATGAGGATGCTGCTTTGGCTCTGAGGTTGCAGAGAGAAGAGTTCATGCAGGAACACTCCAGCAGACCCTCGTTGACTTCAGCTAGAGCAAATTTGAGGGCCTTGGCATCAAGAGCCATGGATCTTCGCATTAGAGATCGAAGAGTGTGA 1104 0.5 MVSEDQKRSPRNQKNPATEGNGQNLDTLFSPRFKSAAAMAGWDEEALLLASLIVEDTPDRDFKHKRRSVLNSKTPPTNSRRKRRAQRSPQATPVAVLDLDGEETPRKDSSDKKKKEKKTCGNEASKVEGNELNEERSGAYSSSSALSCIDKLREELSCAICLEICFEPSTTPCGHSFCRKCLRSAADKCGKRCPKCRQLISNGRSCTVNTVLWNTIQLLFPQEVEARKATGAINSREAAAQCASPETAFYNNLRNGSTEASNRASSRGVSSRRSGGVVATTQDEDAAALARRLQRETGGGNSRNQRGRSSRRGISRSQDEDAALALRLQREEFMQEHSSRPSLTSARANLRALASRAMDLRIRDRRV* 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g1674 367 MobiDBLite consensus disorder prediction 56 136 - -
Dod01g1674 367 MobiDBLite consensus disorder prediction 100 133 - -
Dod01g1674 367 SMART ring_2 158 196 IPR001841 -
Dod01g1674 367 MobiDBLite consensus disorder prediction 13 28 - -
Dod01g1674 367 ProSiteProfiles Zinc finger RING-type profile. 158 197 IPR001841 -
Dod01g1674 367 PANTHER UNCHARACTERIZED 18 260 - -
Dod01g1674 367 PANTHER UNCHARACTERIZED 282 365 - -
Dod01g1674 367 MobiDBLite consensus disorder prediction 1 28 - -
Dod01g1674 367 MobiDBLite consensus disorder prediction 253 278 - -
Dod01g1674 367 SUPERFAMILY RING/U-box 150 221 - -
Dod01g1674 367 Pfam Zinc finger, C3HC4 type (RING finger) 158 196 IPR018957 GO:0046872
Dod01g1674 367 PANTHER - 282 365 - -
Dod01g1674 367 MobiDBLite consensus disorder prediction 253 319 - -
Dod01g1674 367 ProSitePatterns Zinc finger RING-type signature. 173 182 IPR017907 -
Dod01g1674 367 PANTHER - 18 260 - -
Dod01g1674 367 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 103 227 IPR013083 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g1674 150 200 C2H2 Transcription Factor Family AT5G39550 44.231 2.57e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g1674 - - gmx:102666585 424.861
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g1674 01 48614221 48616168 Dod01g1674 01 48614221 48616168 ECH