Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g1670 ATGGGAAGACAGCCTTGTTGTGATAAGGTTGGTTTGAAGAGAGGTCTGCTAAGATGTGGGAAGAGCTGCAGATTGAGATGGATTAATTATCTGAGGCCAGACCTCAAGAGAGGTGGCTTTACAGAAAAGGAAGAGGATCAAATTATACAACTACACTCACGTCTTGGTAACAGGTGGTCTAAGATTGCTTCACATTTTCCCGGGAGGACAGACAATGAAATCAAGAACCATTGGAACACAAGAATCAAGAAGAAGCTGAAGCTCCTTGGACTGGACCCCGTGACCCACAAGCCAATTGACCACAAGGAACACACTGATGAGGACGAAAATAATAAAACCAATCTACAGCCAACTATTTCCAAAGGGTCTGAAGAAAATGTGGAGAACAAGTGCTTGGACAATGATTACACGGAGGAAGTGACTCAAATGACAAGAACAGAAGGGAAAAGAGAAGAAAACAAGGTGAACTGTGATGATACCCCTGAACTTCTAAATAATTTTGAAATGCTATGCTCACAGTTGGACTTGGGATCATGGATGGCACAAGAAGCCAACATCAGTACTAGTTCTTACCGCAGTTCTTCTGTTTCTCTGGATGATTCTAGTTACCTTTCTATGGTTCATGAATCCCCTTACCCTCAGGAAAACTCCTTACAGCAATGGATTGAAAGTATGGATTCAATTCTCTTATGGGATGGCTTCAGTGCCCTTGACCAAGATATTTTCCTATAG 732 0.4221 MGRQPCCDKVGLKRGLLRCGKSCRLRWINYLRPDLKRGGFTEKEEDQIIQLHSRLGNRWSKIASHFPGRTDNEIKNHWNTRIKKKLKLLGLDPVTHKPIDHKEHTDEDENNKTNLQPTISKGSEENVENKCLDNDYTEEVTQMTRTEGKREENKVNCDDTPELLNNFEMLCSQLDLGSWMAQEANISTSSYRSSSVSLDDSSYLSMVHESPYPQENSLQQWIESMDSILLWDGFSALDQDIFL* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g1670 243 Gene3D - 9 36 - -
Dod01g1670 243 Gene3D - 39 86 - -
Dod01g1670 243 CDD SANT 40 80 IPR001005 -
Dod01g1670 243 MobiDBLite consensus disorder prediction 96 111 - -
Dod01g1670 243 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 32 86 IPR017930 -
Dod01g1670 243 SMART sant 36 84 IPR001005 -
Dod01g1670 243 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 15 223 - -
Dod01g1670 243 SUPERFAMILY Homeodomain-like 18 90 IPR009057 -
Dod01g1670 243 MobiDBLite consensus disorder prediction 96 125 - -
Dod01g1670 243 Pfam Myb-like DNA-binding domain 37 80 IPR001005 -
Dod01g1670 243 ProSiteProfiles Myb-like domain profile. 32 82 IPR001005 -
Dod01g1670 243 PANTHER MYB DOMAIN PROTEIN 40 15 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g1670 Dod-Chr1 48471311 48472638 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g1670 1 170 MYB Transcription Factor Family AT5G16600 47.500 1.44e-54 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Dod01g1670 Myb_DNA-binding 1.9e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g1670 K09422 - gmx:100783231 352.058