Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g1663 ATGGCTCCCAACTTTGTATCTTCCTTGGAAGTCCAGTCACCTAAGTCGATTGTACAAGATGTACATAGAAGTATCAATGCCTCAAGAAAAAATTTGGGACATTTTTCATGCGAAACTAGTAACCCAATTGATGATTGTTGGCGTTGTGATCTGAATTGGGAAAGCAATAGGAAAAGACTAGCAGATTGCTCCATTGGGTTTGGCAAGCACGCAGTGGGAGGAAGAAATGGTCAAATCTACGTAGTCACTGACTCGAGTGATGATGACCCAGAGAACCCCAAGCAAGGAACTTTGAGGCATGCTGTTATACAAGGCGAGCCATTGTGGATCATTTTCAAGAGGAATATGATGATCACTCTCAAGCAAGAGCTTATAATGGACTCATTCAAGACAATTGATGGGAGGGGTGCTAGTGTTCACATTTTAGGTGGTGGCTGCATTGCCATACATTTTGTGAGTCATATCATCATCCATGGTATCCACATCCATGATTGTGATAATGACGGAATATCCATCATTAACTCAAAACATATATGGGTTGACCATTGCTCATTATCGAAATGCCATGATGGTCTTATTGATGCAACCCATGGATCCACAGCTATCACCATCTCTAACAATTACATGACCCATCATGATAAGGTGATGCTCTTAGGCCACAGTGACTCGTACACACAAGACAAGGATATGCAGGTCACAATAGCCTTCAACCATTTTGGAGAAGGCCTTGTCCAAAGGATGCCAAGGTGTAGACATGGGTTTTTTCACGTGGTTAACAACGACTATACCCATTGGGAAATGTATGCTATTGGTGGGAGTGCTAACCCTACTATTAATAGCCAAGGGAATAGGTTTCTTGCTGCAGATGATAGGTTTAGCAAGGAGGTAACCAAGCACGAGGATGCACCAGAGAATGAATGGAAGCACTGGAACTGGAGATCAAAGGGGGACATGTTCTTGAATGGTGCATTCTTCAAGGAATCCGGTGCAACTACCTCTTATACCTACTCCAGGGCTTCAAGTATCAATGCGAGACCATCTTCCTTGGTTGGTTCCATGACACAAACTGCTGGTGCACTCAAGTGCATTAAGGCCAGTCGTTGTTGA 1107 0.4345 MAPNFVSSLEVQSPKSIVQDVHRSINASRKNLGHFSCETSNPIDDCWRCDLNWESNRKRLADCSIGFGKHAVGGRNGQIYVVTDSSDDDPENPKQGTLRHAVIQGEPLWIIFKRNMMITLKQELIMDSFKTIDGRGASVHILGGGCIAIHFVSHIIIHGIHIHDCDNDGISIINSKHIWVDHCSLSKCHDGLIDATHGSTAITISNNYMTHHDKVMLLGHSDSYTQDKDMQVTIAFNHFGEGLVQRMPRCRHGFFHVVNNDYTHWEMYAIGGSANPTINSQGNRFLAADDRFSKEVTKHEDAPENEWKHWNWRSKGDMFLNGAFFKESGATTSYTYSRASSINARPSSLVGSMTQTAGALKCIKASRC* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g1663 368 Gene3D - 40 361 IPR012334 -
Dod01g1663 368 PANTHER OS04G0137100 PROTEIN 166 364 - -
Dod01g1663 368 SUPERFAMILY Pectin lyase-like 26 362 IPR011050 -
Dod01g1663 368 Pfam Pectate lyase 125 285 IPR002022 -
Dod01g1663 368 SMART amb_all 115 291 IPR002022 -
Dod01g1663 368 PRINTS Pollen allergen Amb family signature 268 287 IPR018082 -
Dod01g1663 368 PRINTS Pollen allergen Amb family signature 246 265 IPR018082 -
Dod01g1663 368 PRINTS Pollen allergen Amb family signature 63 80 IPR018082 -
Dod01g1663 368 PRINTS Pollen allergen Amb family signature 310 334 IPR018082 -
Dod01g1663 368 PRINTS Pollen allergen Amb family signature 339 362 IPR018082 -
Dod01g1663 368 PANTHER PECTATE LYASE 18-RELATED 10 168 IPR045032 GO:0030570
Dod01g1663 368 PANTHER OS04G0137100 PROTEIN 10 168 - -
Dod01g1663 368 PANTHER PECTATE LYASE 18-RELATED 166 364 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g1663 Dod-Chr1 48197486 48199042 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g1663 5 368 Polysaccharide Lyase AT5G63180 69.409 0.0 548
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g1663 K01728 - gmx:100794814 602.438