Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g1632 ATGCTTCCGCTGCGATTCACCACCCACCCTCACCCTCCGTCGTCGCCATTCCTAAGCCGGCCAAACTCTTGCTCCTTTTGCCCCACGCCTCGTTCCCTTTTCAACCCGGACAGCAACAACAGCCGCTTTCTTCGCTCCAATGTCGGAACTCCCACTCTTCGGGTTTTCGCAGTGTCCGGTAACGGTAACCCCGCATTCAAGATGAACCTCAACGAGTACCTCGTCAATCTCGACAAGCCCCTCGGCATCCGCTTCGCTCTCACCGCCGACGGCAAAATCATCGTCCATTCCCTAGCCAAAGGGGGCAATGCAGAGAGGTCGAGGATAATTATGGTGGGTGACACTTTGAAGAAAGTCGGCGATTCGTCTCAGAACACGCTCGTCGAGATTAAAGACGTTGGAGACGCACAGAAGGTGCTAAAGGAGCAAACAAGTTCTTTTAGCTTGGTTTTTGAGAGGCCCACATCTCCTTTTCCCATTCAACTGCTGCATAAAATGAATGATCTTGAAATTTTGTTTAATAGAGGTCGAGTCCCCATTGTCACCTGGAACAAGACATTATTGGCATCTAATTTACAGCCATCTAATGAGAGCTATGGGAATTCTGGATTTTTGGTGTTCAACTCAAAGTTTCTTAAGTCAAAAGGGAGCAAGTTATTGGGCAATCAAAATCAACATGCCATCATCACCCATGGCGATAGAAACTTCTTTACTGCGCTCACAGCTCAACTTGCTTGTGTTTTTACCGAAGAAGCCTGTGGAGATGGAGAGTGGGCTCATGGAAGTTTTCCACTTGAGGAATATATTCAGGCTTTGGACCGCTCCAAGGATGAGATGTACTACAATCACTCCCTTGGTATGCGCTATAGTAAGATTACAGAGCAAATATATGTGGGATCCTGTATACAAACAGAAGATGATGTGGAAAGCTTGGCAAAAGTTGAGGGAGTTACTGCTGTTCTGAACTTCCAGAGTGGAACTGAAGCTGAAAATTGGGGAATCAGTGTAAAATCAATCAATGACTCGTGTCAAAGGAATAATATTCTGATGATCAACTATCCTATACGGGAGGGAGATTCTTATGATATGAGAAAGAAACTCCCATTTTGTGTGGGGCTATTATTACGACTTCTGAGGAAGAATCTTCGTGTCTATGTTACTTGCACTTCTGGGTTTGATCGGTCTCCTGCTTGTGTGATTGCATACCTGCACTGGATGACAGACGTTTCCCTTCATGCGGCCTATACATGGGTCACTGGAATGCATACGTGCAGACCTGACAGGCCAGCAATTGCATGGGCTACATGGGATCTTATAGCTATGGTTGAAAGGGGAAAACATGATGGACCTCCCACACATGCTGTCACATTTGTCTGGAATGGTCATGAGGGAGAGGATGTAACGTTGGTGGGAGACTTCACTGGAAACTGGAAAGAACCACTCAGGGCTGTGCACCGGGGTGGATCAAGGCATGAAGTTGAAGTTAAACTTCCACAAGGAAAATACTACTACAAGTTCATTGTTAATGGACAGTGGAGGCATTCAACTGCTTCACCAGCCGAAAGGGATGAAAGGGGTAATGTTAACAATATAATTGTCATTGGTGAAACTGCCAGTGTCAGGCCTTCTGTTCAGCACCAGCAGAAAGATGCAAATGTTGTCAAGGTGATTGAGAGGCCTTTAAATGAAAAAGAGCGGTTTATGCTGGCCAAAGCAGCTCGGTGCATTGCTTTCTCTGTCTGTCCTATCAGATTAGCTCCCAAGTAG 1767 0.4618 MLPLRFTTHPHPPSSPFLSRPNSCSFCPTPRSLFNPDSNNSRFLRSNVGTPTLRVFAVSGNGNPAFKMNLNEYLVNLDKPLGIRFALTADGKIIVHSLAKGGNAERSRIIMVGDTLKKVGDSSQNTLVEIKDVGDAQKVLKEQTSSFSLVFERPTSPFPIQLLHKMNDLEILFNRGRVPIVTWNKTLLASNLQPSNESYGNSGFLVFNSKFLKSKGSKLLGNQNQHAIITHGDRNFFTALTAQLACVFTEEACGDGEWAHGSFPLEEYIQALDRSKDEMYYNHSLGMRYSKITEQIYVGSCIQTEDDVESLAKVEGVTAVLNFQSGTEAENWGISVKSINDSCQRNNILMINYPIREGDSYDMRKKLPFCVGLLLRLLRKNLRVYVTCTSGFDRSPACVIAYLHWMTDVSLHAAYTWVTGMHTCRPDRPAIAWATWDLIAMVERGKHDGPPTHAVTFVWNGHEGEDVTLVGDFTGNWKEPLRAVHRGGSRHEVEVKLPQGKYYYKFIVNGQWRHSTASPAERDERGNVNNIIVIGETASVRPSVQHQQKDANVVKVIERPLNEKERFMLAKAARCIAFSVCPIRLAPK* 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g1632 588 Gene3D Immunoglobulins 442 538 IPR013783 -
Dod01g1632 588 Gene3D Protein tyrosine phosphatase superfamily 281 548 IPR029021 -
Dod01g1632 588 SUPERFAMILY E set domains 452 535 IPR014756 -
Dod01g1632 588 CDD E_set_AMPKbeta_like_N 455 534 - -
Dod01g1632 588 ProSiteProfiles Dual specificity protein phosphatase domain profile. 288 450 IPR020422 GO:0006470|GO:0008138
Dod01g1632 588 SUPERFAMILY PDZ domain-like 79 168 IPR036034 GO:0005515
Dod01g1632 588 PANTHER PHOSPHOGLUCAN PHOSPHATASE LSF1, CHLOROPLASTIC 45 588 - -
Dod01g1632 588 CDD DSP_laforin-like 287 433 IPR045204 GO:0019203|GO:0046838
Dod01g1632 588 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 278 421 IPR029021 -
Dod01g1632 588 Pfam Dual specificity phosphatase, catalytic domain 297 418 IPR000340 GO:0008138|GO:0016311
Dod01g1632 588 PANTHER PHOSPHOGLUCAN PHOSPHATASE LSF1, CHLOROPLASTIC 45 588 IPR030066 GO:0005983
Dod01g1632 588 MobiDBLite consensus disorder prediction 1 21 - -
Dod01g1632 588 ProSiteProfiles PDZ domain profile. 74 155 IPR001478 GO:0005515
Dod01g1632 588 Gene3D - 73 153 IPR036034 GO:0005515
Dod01g1632 588 Pfam Glycogen recognition site of AMP-activated protein kinase 455 536 IPR032640 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g1632 Dod-Chr1 47172093 47188463 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g1632 139 588 Protein tyrosine phosphatase (PTP) family AT3G01510 68.444 0.0 650
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g1632 - - gmx:100814503 1029.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g1632 01 47172093 47188463 Dod01g1632 01 47172093 47188463 ECH