Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g1628 ATGGCTCTTACACTTCAAACTGCTTTCTCTCGTATACTTAATCTAGTAGCTTTTCTCTCAATATTCCTTACCCCTTCCTATTGCTTCAACCCCAAGAAGCTTGTTAATGCTTCATACTCCCCATCTGGATCAGATTGGTCACCTGCAATTGCCACTTGGTATGGACCTGCTAATGGTGATGGAAGTGAAGGTGGTGCTTGCGGATATGGCAGCACTGTTGGGCAATCTCCACTATCTTCAATGATATCAGCAGGAAGCCCTCTTTTATATGACTCGGGCAAAGGCTGTGGTTCTTGTTATGAGGTGAAGTGCACAGGGATTTCTGCATGCTCAGGAAACCCTGTGACGGTAGTCATCACTGATGAGTGTGCTGGGTGTGGCTCAGATGCTCAATATCATTTTGATTTGAGCGGCAGTGCTTTCGGTGCCATGGCAGTCTCAGGTCAGGATGGGAACCTACGAAATGCTGGGAAAATAAATATTCAACATAGAAGAGTTGAATGCAACTACCCGGGTATGTCAATTGCTTTTCACGTGGACTCCGGATCCAACCAAGAATATTTTGCCGCCTTGATTGAATATGAGGATGGGGATGGTGACCTTGCCAAAGTTGAACTCAAGGAAGCACTAGACTCAGCCTCGTGGTATTCCATGCAGCAATCATGGGGTGCAGTTTGGAAACTTGACAAAGGCTCGCCGCTGAAAGCACCATTCTCTATGAGGCTAACCACGCTTGAGTCAGGGAAGACCATTGTGGCCAGCAATGTGATCCCTGTTGGGTGGAGTCCTGGTCAGACCTACAGATCAATTGTTAATTTTGGAACTTAA 828 0.465 MALTLQTAFSRILNLVAFLSIFLTPSYCFNPKKLVNASYSPSGSDWSPAIATWYGPANGDGSEGGACGYGSTVGQSPLSSMISAGSPLLYDSGKGCGSCYEVKCTGISACSGNPVTVVITDECAGCGSDAQYHFDLSGSAFGAMAVSGQDGNLRNAGKINIQHRRVECNYPGMSIAFHVDSGSNQEYFAALIEYEDGDGDLAKVELKEALDSASWYSMQQSWGAVWKLDKGSPLKAPFSMRLTTLESGKTIVASNVIPVGWSPGQTYRSIVNFGT* 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g1628 275 Pfam Expansin C-terminal domain 175 258 IPR007117 -
Dod01g1628 275 Pfam Lytic transglycolase 83 162 IPR009009 -
Dod01g1628 275 PANTHER EXPANSIN-B3 15 273 - -
Dod01g1628 275 PRINTS Major pollen allergen Lol pI signature 145 160 IPR005795 GO:0005576|GO:0019953
Dod01g1628 275 PRINTS Major pollen allergen Lol pI signature 84 95 IPR005795 GO:0005576|GO:0019953
Dod01g1628 275 PRINTS Major pollen allergen Lol pI signature 104 114 IPR005795 GO:0005576|GO:0019953
Dod01g1628 275 PRINTS Major pollen allergen Lol pI signature 177 192 IPR005795 GO:0005576|GO:0019953
Dod01g1628 275 PRINTS Major pollen allergen Lol pI signature 224 241 IPR005795 GO:0005576|GO:0019953
Dod01g1628 275 PRINTS Major pollen allergen Lol pI signature 193 208 IPR005795 GO:0005576|GO:0019953
Dod01g1628 275 SUPERFAMILY PHL pollen allergen 175 269 IPR036749 -
Dod01g1628 275 Gene3D - 33 169 IPR036908 -
Dod01g1628 275 Gene3D - 170 273 IPR036749 -
Dod01g1628 275 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 186 269 IPR007117 -
Dod01g1628 275 PANTHER EXPANSIN-B2-RELATED 15 273 - -
Dod01g1628 275 SUPERFAMILY Barwin-like endoglucanases 38 172 IPR036908 -
Dod01g1628 275 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 64 173 IPR007112 -
Dod01g1628 275 PRINTS Expansin/Lol pI family signature 63 81 IPR007118 GO:0005576
Dod01g1628 275 PRINTS Expansin/Lol pI family signature 255 269 IPR007118 GO:0005576
Dod01g1628 275 PRINTS Expansin/Lol pI family signature 86 104 IPR007118 GO:0005576
Dod01g1628 275 PRINTS Expansin/Lol pI family signature 215 229 IPR007118 GO:0005576
Dod01g1628 275 PRINTS Expansin/Lol pI family signature 45 60 IPR007118 GO:0005576
Dod01g1628 275 PRINTS Expansin/Lol pI family signature 156 172 IPR007118 GO:0005576
Dod01g1628 275 SMART dpbb_1 82 163 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g1628 Dod-Chr1 46967247 46968801 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g1628 26 273 Expansin Gene Family AT1G65680 61.694 9.51e-114 327
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g1628 - - gmx:548090 497.278
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g1628 01 46967247 46968801 Dod07g1692 07 44846268 44851291 PCT