Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g1610 ATGAGAAGACTGCTAAGGACGATTCAAAAGCCAATAAGGGAACTCGGAAGAAAAACAGGAACTGAGGGAAAAGAGAAGAGACATGAAAATAAGAAGGAAAAAACTGCAATAGGAGTGATGGGAAAGATTCTGCGTGAAATTCCTGGCTTGTTAGTTCTAGATGAAGGCCACACGCCACGAAATCAGCGCAGTCTGATTTGGAAGGTTCTGTCGGAAATTCAAACGCAAAAGCGAATCATCCTCTCAGGGACTCCTTTCCAAAACAATTTCCTGGAACTCTACAATACACTGTGCATAGTCAAGCCATCGTTTCCTGACATGATACCGCATGAACTAAAAAAATTCTGCCAGAGTAGATTGTTGCAAGAAAAGAAAGCATCTGAAGGTCGGACTTGGGAACCAGTTTCTTCTGGCAAAACAACTGGAATGCCTGCTGATGATAAAATAGGCCAGTTGAAATTGCTGATGGATCCATTTGTTCATGTTCACAAAGGCAGCATCCTTCAAAAAAATCTTCTCGGTTTGAGAGATTGCGTGGTGACCTTGATCCCAGACGACATGCAGAAAGCACTTCTAGAGAGCATTGAATGTTCTCAAAACACATTGAAGTTTGACCACAAGTTGGCTCTGGTCTCTGCCCATCCGTCCCTTTTCCTCTGCTGCTCTCTATCAGAAAAAGAAGAATCTGTTGTCGACCGGGATCACTTGGAACGCGATAGATTGAATCCATATGTTGGAGTCAAAACCAGATTCCTAGTGGAGTTCGTGCGGCTGTGTGAGGCAGTCAATGAGAAAGTGCTTGTCTTCAGCCAGTTCATTGATCCTTTATGTCTAATCAAAGAGCAGCTGAAAAAAGTTTTTAATTGGGCTGAGGGAAAGGAACTGCTGTATATGAGTGGCAAACTTGACAAAAAGCAAAGGCAGCTCATGATTCATGGCTTCAATGATGCAAACAGCCAAGCAAAGATATTACTTGCATCAACAAAAGCATGTTCTGAGGGAATTAACTTAGTTGGAGCTTCAAGGGTTGTGCTGCTGGATGTTGTTTGGAATCCTTCGGTGGAAAGGCAAGCGATTAGCCGAGCATACCGGCTTGGCCAGAAAAAGGTTGTGTACACGTATCATCTTGTTACACATGGAACCAGTGAATATGAAAAGTATTGTAAGCAGGCCAAAAAGGACCGGTTATCTGAACTGGTTTTCTCAACTAGAAATAACGAAGATGATGAACCAAAGAGTACTGCTGCTGTTATTGAGGATGAAGTTCTTGATATGATGGTTCGGCATGAGAAACTGAAGGACATGTTTGGCGAGTGTGTGGCACATCCAAAGGACAGAGATTTGTCTGAGATTTATGGCTTTTAA 1365 0.4271 MRRLLRTIQKPIRELGRKTGTEGKEKRHENKKEKTAIGVMGKILREIPGLLVLDEGHTPRNQRSLIWKVLSEIQTQKRIILSGTPFQNNFLELYNTLCIVKPSFPDMIPHELKKFCQSRLLQEKKASEGRTWEPVSSGKTTGMPADDKIGQLKLLMDPFVHVHKGSILQKNLLGLRDCVVTLIPDDMQKALLESIECSQNTLKFDHKLALVSAHPSLFLCCSLSEKEESVVDRDHLERDRLNPYVGVKTRFLVEFVRLCEAVNEKVLVFSQFIDPLCLIKEQLKKVFNWAEGKELLYMSGKLDKKQRQLMIHGFNDANSQAKILLASTKACSEGINLVGASRVVLLDVVWNPSVERQAISRAYRLGQKKVVYTYHLVTHGTSEYEKYCKQAKKDRLSELVFSTRNNEDDEPKSTAAVIEDEVLDMMVRHEKLKDMFGECVAHPKDRDLSEIYGF* 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g1610 454 Gene3D - 21 138 IPR038718 -
Dod01g1610 454 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 26 452 IPR044567 GO:0080188
Dod01g1610 454 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 254 407 IPR001650 -
Dod01g1610 454 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 103 IPR014001 -
Dod01g1610 454 Pfam SNF2-related domain 50 105 IPR000330 GO:0005524|GO:0140658
Dod01g1610 454 Gene3D - 176 450 IPR027417 -
Dod01g1610 454 CDD SF2_C_SNF 223 377 - -
Dod01g1610 454 Pfam Helicase conserved C-terminal domain 255 366 IPR001650 -
Dod01g1610 454 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 4 26 452 - -
Dod01g1610 454 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 49 403 IPR027417 -
Dod01g1610 454 SMART helicmild6 281 366 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g1610 Dod-Chr1 46271956 46273320 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g1610 264 396 RAD5 or RAD16-like Gene Family AT5G43530 40.602 3.09e-19 89.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Dod01g1610 Helicase_C 4.2e-16 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g1610 K10875 - gmx:100807262 600.127