Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g1597 ATGGGAGTCCACGGTCTCTGGGAACTACTTGCCCCCGTCGGCCGCCGCGTCTCCGTCGAGACCCTCGCCGGAAAAACGCTGGCCGTCGATGCGAGCATATGGATGGTGCAATTTATGAAGGCGATGCGTGACGAGAAGGGCGAAATGGTTCGCAACGCTCACTTGCTGGGATTCTTCCGTCGAATTTGCAAGCTCTTGTTCCTCCGGACCAAGCCGGTCTTCGTCTTCGACGGCGGAACCCCCGCCCTCAAGCGCCGCACCGTCATCGCCCGCCGCAGGCAGCGGGAGAATGCCCAGGCCAAAGTCCGCAAGACTGCCGAGAAATTGCTTCTCAATCACTTAAAGGCATTGAGGTTGAAAGAGCTGGCTAATGATATTAAGAGCCAGAGGCTGAAGCAGAAGAGTGATACCAAGGGACCAAAAGAACCTGATCGGATGGGATTCTGTCTGCAGCTAAATTTGCAGCTACAGGAGAAAGAAGCTTATTGCAAGGAAAAAGATCGAGAAGTCACAACCAGGAGGAGCTTGATGAAATCCGAGAAAGAAGTGGCATCTACTGTAAATAATACTTCAGAGGATAACTGCGACACAGATGAAGAGATGATACTGCCTTCAAGCAATGCTGATGTAGATTTAGGTGTTTTAGCTGCTTTGCCTCAGTCAATGCAACTTGATATTCTTGCACAGCTTAAAGGAAAGAAATCACAAGCACCAGTGAAGGATGTTGAAAATCAGAAACGACATGAGGGCAATGCTAGGGACAAGGGTAAGGGGATTCTGTATAGTGAAACTGACATGGCAGGCTGTTGCACAGGATGTGACAATTTGACATCAAGGAATGAGAATCAAGACAAAATTGATGAAATGTTAGCTGCATCTATTGCTGTGGAGGAAAATTCAATGTCATTGAATAATGCATCAACTTCTCTTGGGGCTTCCACCATTGAGGAAGAGGATGATGACTATGATGAAGATGAAGAGATGATATTGCCTGCAATGCATGGTGAAGTTGATCCAGCTATTCTAGCCTCGTTGCCTCCATCAATGCAACTGGATCTCCTGGTTCAGATGAGAGAGCGATTGATTGCAGAGAATCGACAAAGGTATCAAAAAGTAAAGAAGGATCCTGCAAAATTCTCTGAGCTACAAATACAAGCTTACCTTAAAACTGTTGCTTTCCGACGGGAGATAGATGAAGTACAAAAAGCTGCTGCTGGGCGAGGAGTAGGTGGTGTACAGACCTCACGGATTGCATCTGAAGCCAACAGAGAGTATATATTCTCATCATCTTTCTCTGGTGACAAACAAGAACTTACATCCACCAGAACAGAGAAGAATGATGATACTCATCAAAAGACACGGGGAACACATCCTGCTGAGAATTTCGCTAATATTATCGCAGAAGGCAATGCTACTTCAAGTGGATTGGATTGCAATGAACCTAGCGAGTCTGTTGACGGAAGTGTTCAGACGTATCTAGATGAGAGGGGTCGATTTCGGGTTAGTAGGTTGAGAGCTATGGGGATGCGTATGACCCGTGATATACAAAGAAATTTGGATTTGATGAAGGAGATTGAGCAAGAGAGAACATATGTGAACAAAGCTGCAAATATTGACACAGTGCTGACTGTAGAGAATGCTGGTCCATTGGAAAGTTCTAGGACCAAGCTTATCGGTAAAACACAAGGGATGAATGTGGATTCAGTTGCAAAAGAACAACCTTTGGGTTCAGATTCAGATTGTGATTGGGTAGAAGGAGTTATTGAAGGTAAGAATACCATTGTTCCTGGAGATAATAAGGTGGAACAGAAGTCTCCTGTGGCAGAAGAGGATAATAATGATGAGAGTGAAGTAGAATGGGAGGAAGGGGATTGTGACTGGTTGATCCCCTTGGCGCCATTGGAGAGGAGAAAAATTACTGTTCATCATGAATGTGGACCATTGAGTAATTCTATTGAGAATACCAAGTCTGCTATACCTTTGATGGAGTCATCCTTGAAAGGATCAACAGAAAACCTTGACATTGAGCCAAAGTTTGCTGCAGTGGACAATGAAGGAAGTCTCAGCAGAGAAAGGAATAGTAACCTTGCGAAAGATGCAGTGAACACCTTTGGAGATTTTGCTGCACATGTAGCTAAGGTTGATTTGGAAGAAGAAATCCAAAAGCTTGGTCAAGAATACTTCAACCTAGAAAGTGAGCAGAGGAAGCTTGAACGTAATGCTGAATCTGAACTACTGCAAATGTTTGGCTTGCCATATATTATTGCTCCGATGGAAGCTGAAGCGCAGTGTGCTTTCTTGGAGCTTGCAAAACTGGTTGATGGTGTTGTAACTGATGATTCTGATGCCCTGTTGTTTGGGGCTCAGACATACTTCATGGAGGACATTGAGAAGGAGCTTGGGTTGACTAGAGAAAAATTAATACGCATGGCACTACTTCTTGGGAGTGATTATACTGAAGGTGTAAGTGGGATTGGCATTGTCAATGCTATTGAGGTTGTGAATGCATTCCCTGAGGATGATGGCCTCTTGAAATTCCGGCAGTGGGTAGAGTCACCAGATCCCACCATTCTTGAAAGGCTGAATGCAAAAAGTGGATCCAATACCAGAAAGAAAGGGTCAAAAGTTGAACACAAGATAAATGCTTCAAATCACAATATTGAAGAGCTTGTGTCAGACCAAATTACCAATCATCCCCAGGAGCAAAAGGAATCTTCGGATTACAACCAAGAAACTAAGCAAACTTTTTTTGAGAAGCATAGAAATATTAGCAAGAATTGGCATATTCCTTCTTCTTTTCCCAGTGAAACAGTTATATCTGCTTACTATTCTCCACAAGTTGACAAGTCAACTGAGCCTTTCACTTGGGGGAAGCCAGATCATCTCATTCTTCGAAAATTGTGCTGGGAGAAATTTGGGTGGACAAGTCAGAAAGCAGATGAATTGTTGTTACCTGTTTTAAAGGAATATAACAAACACGAGACTCAACTGCGTTTGGAAGCATTTTATAGTTTCAATGAAAGATTTGCAAAAATTCGTAGCAAGAGAATTAAGAAAGCTGTAAAAGGAATTACTGGTAAGCAGACGTCAGAATTGACAGATGATTCCAATTGTACAAAGAGTGCGAGAGGAAGTCCTGTAGAAGTGGGGGATAACGACTTGGAAAATTTAAAGGGAAAAGAAGAAAGTCTTGAGGGTAGGAAGAAGCCTAAAGTGAAACAATCAAGAAAAAAGAAGAATGAAGGGCATACTGCTGATAAGGCACCATCAATGAGAAACAAAATCACTGATGATCCTTCCTTAGCTCCTGGTACATCTGAGGGGGAGAATTTACAGCCATCTACAGAGGAAAAAGACCAATGTGATGCGAAGGCATTGATTCAGAATAGAAGTGGCAGAGGACGAGGACAAGGACGAGGACGAGGTAGAGGTTTGGGAGTAAAACGAGGAAGGGAAAAGGAAAGTCTTCTTTCTCAATCATGTGAAACCTCATCTGATAGTAGTGACACTGATGATCATGGCCCAAGATTGCATGTTGATTTGTCAAAAGTTCCACAAGAGGTGCGAAGGTCAATGCGATCTCGAAAGCCTGTCAACTATTTTGAGAACATTGGAGTTGAAGATGCCATCAATGATTCATCTGATCTGCAACCGACATCATTGTGTGAAGAGCCAATTGAACAAAACTCATCTTATATTCATGTTGCACGTGCAGATGCTGCAACTGATTTCAGCAGAGATAAAGAAAGTAATATAATAACTAGTCCTCTAGATGAGAACTTGCCTAGAGACTATCTCGAGTCGGGAAGTTGGTTTTGCACAGATGCTGGTGGGACTAGTCATCCTGATATTGCTATTAGTGCTGACTCCTCTGAAGACTATCTTAAAATGGGAGGCGGTTTCTGTTTAGATGATAGTGATATGCGTGACGACCATAATGCAAATGATGGTGTAAATACTGCTGATGACACTGAAGATTTTCCACGCTGTTCCGTTATGCTGGATGAGACTGACCGTGATAAAAATAGTTCAGATACATTGATTTCTGGCAATGAAAAAGCTGACATTGAGATGCAAGAGGAAGGAGGGCCTGCTTGTAAAGTCAATAAGGAGCCAAATGAAGACCCTCTAAGTGCAAGTTATGATCACTCTGAAACCGAGGTCTTGGTATCAGAGAGTGCTAATCATAATGGTGGAAGCTACACTGAAGCTTTTAGGGCAATGCCATTTTTGAGGAAAAGAAGAAAGAAGAACTAA 4257 0.4304 MGVHGLWELLAPVGRRVSVETLAGKTLAVDASIWMVQFMKAMRDEKGEMVRNAHLLGFFRRICKLLFLRTKPVFVFDGGTPALKRRTVIARRRQRENAQAKVRKTAEKLLLNHLKALRLKELANDIKSQRLKQKSDTKGPKEPDRMGFCLQLNLQLQEKEAYCKEKDREVTTRRSLMKSEKEVASTVNNTSEDNCDTDEEMILPSSNADVDLGVLAALPQSMQLDILAQLKGKKSQAPVKDVENQKRHEGNARDKGKGILYSETDMAGCCTGCDNLTSRNENQDKIDEMLAASIAVEENSMSLNNASTSLGASTIEEEDDDYDEDEEMILPAMHGEVDPAILASLPPSMQLDLLVQMRERLIAENRQRYQKVKKDPAKFSELQIQAYLKTVAFRREIDEVQKAAAGRGVGGVQTSRIASEANREYIFSSSFSGDKQELTSTRTEKNDDTHQKTRGTHPAENFANIIAEGNATSSGLDCNEPSESVDGSVQTYLDERGRFRVSRLRAMGMRMTRDIQRNLDLMKEIEQERTYVNKAANIDTVLTVENAGPLESSRTKLIGKTQGMNVDSVAKEQPLGSDSDCDWVEGVIEGKNTIVPGDNKVEQKSPVAEEDNNDESEVEWEEGDCDWLIPLAPLERRKITVHHECGPLSNSIENTKSAIPLMESSLKGSTENLDIEPKFAAVDNEGSLSRERNSNLAKDAVNTFGDFAAHVAKVDLEEEIQKLGQEYFNLESEQRKLERNAESELLQMFGLPYIIAPMEAEAQCAFLELAKLVDGVVTDDSDALLFGAQTYFMEDIEKELGLTREKLIRMALLLGSDYTEGVSGIGIVNAIEVVNAFPEDDGLLKFRQWVESPDPTILERLNAKSGSNTRKKGSKVEHKINASNHNIEELVSDQITNHPQEQKESSDYNQETKQTFFEKHRNISKNWHIPSSFPSETVISAYYSPQVDKSTEPFTWGKPDHLILRKLCWEKFGWTSQKADELLLPVLKEYNKHETQLRLEAFYSFNERFAKIRSKRIKKAVKGITGKQTSELTDDSNCTKSARGSPVEVGDNDLENLKGKEESLEGRKKPKVKQSRKKKNEGHTADKAPSMRNKITDDPSLAPGTSEGENLQPSTEEKDQCDAKALIQNRSGRGRGQGRGRGRGLGVKRGREKESLLSQSCETSSDSSDTDDHGPRLHVDLSKVPQEVRRSMRSRKPVNYFENIGVEDAINDSSDLQPTSLCEEPIEQNSSYIHVARADAATDFSRDKESNIITSPLDENLPRDYLESGSWFCTDAGGTSHPDIAISADSSEDYLKMGGGFCLDDSDMRDDHNANDGVNTADDTEDFPRCSVMLDETDRDKNSSDTLISGNEKADIEMQEEGGPACKVNKEPNEDPLSASYDHSETEVLVSESANHNGGSYTEAFRAMPFLRKRRKKN* 1419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g1597 1418 Pfam XPG I-region 750 792 IPR006086 GO:0004518
Dod01g1597 1418 ProSitePatterns XPG protein signature 2. 750 764 IPR019974 GO:0016788
Dod01g1597 1418 MobiDBLite consensus disorder prediction 1053 1069 - -
Dod01g1597 1418 Gene3D - 1 153 - -
Dod01g1597 1418 CDD H3TH_XPG 805 949 - -
Dod01g1597 1418 PANTHER DNA REPAIR PROTEIN COMPLEMENTING XP-G CELLS-RELATED 649 1417 - -
Dod01g1597 1418 PANTHER DNA REPAIR PROTEIN COMPLEMENTING XP-G CELLS-RELATED 1 236 - -
Dod01g1597 1418 SUPERFAMILY PIN domain-like 2 817 IPR029060 -
Dod01g1597 1418 PANTHER DNA REPAIR PROTEIN COMPLEMENTING XP-G CELLS 568 635 - -
Dod01g1597 1418 MobiDBLite consensus disorder prediction 436 456 - -
Dod01g1597 1418 Pfam XPG N-terminal domain 1 97 IPR006085 GO:0004518
Dod01g1597 1418 MobiDBLite consensus disorder prediction 174 197 - -
Dod01g1597 1418 Gene3D - 679 801 - -
Dod01g1597 1418 MobiDBLite consensus disorder prediction 1353 1384 - -
Dod01g1597 1418 MobiDBLite consensus disorder prediction 438 455 - -
Dod01g1597 1418 Gene3D - 802 860 - -
Dod01g1597 1418 PRINTS Xeroderma pigmentosum group G protein signature 54 77 IPR001044 GO:0003697|GO:0004519|GO:0005634|GO:0006289
Dod01g1597 1418 PRINTS Xeroderma pigmentosum group G protein signature 2 19 IPR001044 GO:0003697|GO:0004519|GO:0005634|GO:0006289
Dod01g1597 1418 PRINTS Xeroderma pigmentosum group G protein signature 96 118 IPR001044 GO:0003697|GO:0004519|GO:0005634|GO:0006289
Dod01g1597 1418 PRINTS Xeroderma pigmentosum group G protein signature 985 1005 IPR001044 GO:0003697|GO:0004519|GO:0005634|GO:0006289
Dod01g1597 1418 Coils Coil 713 740 - -
Dod01g1597 1418 MobiDBLite consensus disorder prediction 1026 1043 - -
Dod01g1597 1418 PANTHER DNA REPAIR PROTEIN COMPLEMENTING XP-G CELLS 649 1417 - -
Dod01g1597 1418 PANTHER DNA REPAIR PROTEIN COMPLEMENTING XP-G CELLS 1 236 - -
Dod01g1597 1418 ProSitePatterns XPG protein signature 1. 70 84 IPR019974 GO:0016788
Dod01g1597 1418 MobiDBLite consensus disorder prediction 1020 1193 - -
Dod01g1597 1418 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 24 38 IPR006084 -
Dod01g1597 1418 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 746 763 IPR006084 -
Dod01g1597 1418 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 767 787 IPR006084 -
Dod01g1597 1418 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 72 91 IPR006084 -
Dod01g1597 1418 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 802 1011 IPR036279 -
Dod01g1597 1418 SMART xpgineu 747 802 IPR006086 GO:0004518
Dod01g1597 1418 SMART HhH_4 804 837 IPR008918 GO:0003677|GO:0003824
Dod01g1597 1418 MobiDBLite consensus disorder prediction 1079 1093 - -
Dod01g1597 1418 MobiDBLite consensus disorder prediction 237 257 - -
Dod01g1597 1418 PANTHER DNA REPAIR PROTEIN COMPLEMENTING XP-G CELLS-RELATED 568 635 - -
Dod01g1597 1418 PANTHER DNA REPAIR PROTEIN COMPLEMENTING XP-G CELLS-RELATED 230 544 - -
Dod01g1597 1418 MobiDBLite consensus disorder prediction 594 618 - -
Dod01g1597 1418 PANTHER DNA REPAIR PROTEIN COMPLEMENTING XP-G CELLS 230 544 - -
Dod01g1597 1418 MobiDBLite consensus disorder prediction 1166 1193 - -
Dod01g1597 1418 Pfam Ubiquitin binding region 336 361 IPR025527 -
Dod01g1597 1418 Pfam Ubiquitin binding region 205 229 IPR025527 -
Dod01g1597 1418 SMART xpgn3 1 98 IPR006085 GO:0004518
Dod01g1597 1418 CDD PIN_XPG_RAD2 2 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g1597 Dod-Chr1 45564457 45575975 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g1597 745 967 Core DNA Replication Machinery Family AT5G26680 24.809 1.38e-10 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g1597 K10846 - gmx:100820295 907.516
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g1597 01 45564457 45575975 Dod01g1597 01 45564457 45575975 ECH