Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g1578 ATGAGCCATGGAGAAGGCTCCGATGGAGATGATGCGGCAAAGCCTGTTCACTTTTTCAAGATCATGCTCTCTAACACCATTTTGGACCAAAAACTAAGGATTCCCGGAAAGTTTGTGAGGAAATATGGAGAACGCTTATCCAACAAAATAGTCCTTAAGCTTCCAAACGGTGCAGAATGGGAAGTAAATTTGGAGAAACGTGATGGTGGAATTTGGATTCAAAATGGTTGGAAAGAGTTTGTGGAGCATCACTCTCTGAGCCATGGGCATCTGTTGGTTTTCAAATATGAAGGAACTTCCAGTTTTCATGTGCTCATTTGTGATATGAGTGCTGTGGAAATAGACTACCCTTTCTATCATGTGCATGGTAAAAGAGCTAAAACTAGTGAAGAACTTCGACCACTTAAAACAAGAAAAACAAATGCAAACAACAAAGTAGGGAGCACTTCCAATTTGAAGGACTCTTCCTTCCGTCAGATAATTAGTGACTGCAAAGGTAAGTTAAAGAATCCTAGTGAGGAGAAGAGAACCATTGATCTGCATCTTGAACGACCATCGTTCAGCAATTCTGGAGCTCTGGAAGCTGTTGCCAATACTTCCTTCACGAGAATCATTAAATCATGCAAAATGAAATGGAAGTGCATGTGGCTGCCGAGGGGCTCCTTGAAGGGTTACATCAAACCCGGGAAGCAATATGCTACACTACTGGTGGGGAAAAGACGATGGAGGATTAATTTGATCCATTATGAAAAGCGTTCAATGACTTGCCTTTCTGCAGGCTGGAGAGTATTCGCAAAGGAAAACGATTTGGACGTAGGAGATGCTTGCTCCTTCGAGCTGCTAAGCAGTATTGACGGCATTGTGATGAAGGCTGCTAGTGAATCTGTCCGCCTGAGCACCACCATCATCCACCTCAACTATGCCGCTGCCTCTGCTCCACGATGCTACTGCCCCTGTCCCATGACACCGCCGCCTCTGCTTCGTGCTCCCCTCGCCTCTGGCATCGAGCTCACCAAGTAG 1020 0.4529 MSHGEGSDGDDAAKPVHFFKIMLSNTILDQKLRIPGKFVRKYGERLSNKIVLKLPNGAEWEVNLEKRDGGIWIQNGWKEFVEHHSLSHGHLLVFKYEGTSSFHVLICDMSAVEIDYPFYHVHGKRAKTSEELRPLKTRKTNANNKVGSTSNLKDSSFRQIISDCKGKLKNPSEEKRTIDLHLERPSFSNSGALEAVANTSFTRIIKSCKMKWKCMWLPRGSLKGYIKPGKQYATLLVGKRRWRINLIHYEKRSMTCLSAGWRVFAKENDLDVGDACSFELLSSIDGIVMKAASESVRLSTTIIHLNYAAASAPRCYCPCPMTPPPLLRAPLASGIELTK* 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g1578 339 Pfam B3 DNA binding domain 18 108 IPR003340 GO:0003677
Dod01g1578 339 Pfam B3 DNA binding domain 206 283 IPR003340 GO:0003677
Dod01g1578 339 PANTHER B3 DOMAIN-CONTAINING 11 291 - -
Dod01g1578 339 ProSiteProfiles B3 DNA-binding domain profile. 17 110 IPR003340 GO:0003677
Dod01g1578 339 ProSiteProfiles B3 DNA-binding domain profile. 240 295 IPR003340 GO:0003677
Dod01g1578 339 CDD B3_DNA 213 280 IPR003340 GO:0003677
Dod01g1578 339 CDD B3_DNA 17 108 IPR003340 GO:0003677
Dod01g1578 339 SUPERFAMILY DNA-binding pseudobarrel domain 198 283 IPR015300 -
Dod01g1578 339 SMART B3_2 201 295 IPR003340 GO:0003677
Dod01g1578 339 SMART B3_2 18 110 IPR003340 GO:0003677
Dod01g1578 339 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR VRN1-LIKE 11 291 - -
Dod01g1578 339 SUPERFAMILY DNA-binding pseudobarrel domain 14 109 IPR015300 -
Dod01g1578 339 Gene3D - 188 292 IPR015300 -
Dod01g1578 339 Gene3D - 11 111 IPR015300 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g1578 18 292 B3 DNA Binding Superfamily AT3G18990 28.313 1.51e-36 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Dod01g1578 B3 1e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g1578 - - aprc:113849508 356.295