Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g1555 ATGAGTCAGTGCGTCCCAAGCTGGGAGGTGGACGACAACAATCCACCGCCCGCCAAAGTCTCCCTCCGTTCCAACTCTAACTCAACTGCCCCTGATGTCCCCATGTTAGACTATGAAGTTGCAGAACTGACATGGGAAAACGGACAACTTTCAATGCATGGCTTAGGGTTGCCGCGTGTGCCAACCAAATCCTCCATTGTGACGGCCACAACCACCACTACTTCCAAGTACACATGGGAGAAGCCTCGTGCTAGTGGCACTTTGGAGTCCATAGTAAACCAAGCCACTGGCTCACCCCACCCCGGTAAATCATCGTTCCATGGTGCTGGTGGTGGCCACGGTGATGGTGATTGTGACGGTATTTATGGGAACGTACTAGTCCCATGGTTTGATCCCCACCGTGCTGCGGCAGCGGCCTCAAACACGGTGACCATGGACGCGTTGGTACCATGCTCAAACCGCACGGAGGAGCGGAGCACACAGGTCATGGGCTCCATCCCCCGAGGGCTTGGAGCGTGTATGGTGGGTTGCTCCAAACGTGTGGGGCCCTGTGGTGGTGCCGCTGTCACCACGCAGGAGGAAGGCGGGCTTGTTGCCGCAGCGGCAAAGCGTGCCAGAGTGGCGCGTGTGCCGGTAGCCGCACACGAGCTGAGCAGCAGGGATCAGAGCGTGAGCGGCAGTGCCACCTTTGGGAGGGACAGCCAGCACATGACGACGCTAGACACGTCCGACAGGGAGCTTGGAGTGGGTTTCACTTCCACATCCTTAGGATCGCCTGACAACACAAGCTCCGCAAAGCAGTGCACCAAGACCAACACAGTAGATGACCATGATTCTGTTTGCCACAGTAGATCTATGAGGGAGGAAGGAGATGAAGATGAGAAAAAGAAAGAAATTGCAAAATCTTCTGTGTCCACTAAAAGGAGTAGAGCTGCTGCTATACACAACCAGTCTGAAAGAAAAAGGAGGGATAAGATAAACCAGAGAATGAAGACTTTGCAAAAGCTGGTCCCAAATTCCAGCAAGACCGATAAAGCTTCAATGTTGGATGAGGTGATAGAATATCTTAAACAGTTGCAAGCACAAGTGCAGATTATGAATAGGATCAACATGTCATCCATGATGCTGCCAATGACCATGCAACAACAGCTTCAAATGTCGATGATGGCTCCGATGGGCATGGGCATGGGGATGGGTATGGGGATGGGCATGGGCATGGGCATGGATATGAACGCCATGAGTCGTGCTAACATTCCTGGCATCCCTCCGGTCCTCCACCCATCTGCCTTCATGCCCATGGCCTCATGGGATGCCAGCGCCGGCGACCGACTTCAAGGGCCTCCAGCCACTGTGATGCCTGACCCTTTATCCACTTTTTTCGGATGCCCATCCCAGCCCATGAGCATGGATGCCTACAGTAGGCTTGCTGCCATGTATCAGCAGTTGCACCAACCTCCAGCTTCTGGTTCCAAAAGCTGA 1479 0.5389 MSQCVPSWEVDDNNPPPAKVSLRSNSNSTAPDVPMLDYEVAELTWENGQLSMHGLGLPRVPTKSSIVTATTTTTSKYTWEKPRASGTLESIVNQATGSPHPGKSSFHGAGGGHGDGDCDGIYGNVLVPWFDPHRAAAAASNTVTMDALVPCSNRTEERSTQVMGSIPRGLGACMVGCSKRVGPCGGAAVTTQEEGGLVAAAAKRARVARVPVAAHELSSRDQSVSGSATFGRDSQHMTTLDTSDRELGVGFTSTSLGSPDNTSSAKQCTKTNTVDDHDSVCHSRSMREEGDEDEKKKEIAKSSVSTKRSRAAAIHNQSERKRRDKINQRMKTLQKLVPNSSKTDKASMLDEVIEYLKQLQAQVQIMNRINMSSMMLPMTMQQQLQMSMMAPMGMGMGMGMGMGMGMGMDMNAMSRANIPGIPPVLHPSAFMPMASWDASAGDRLQGPPATVMPDPLSTFFGCPSQPMSMDAYSRLAAMYQQLHQPPASGSKS* 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g1555 492 MobiDBLite consensus disorder prediction 252 270 - -
Dod01g1555 492 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 1 491 IPR031066 -
Dod01g1555 492 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 313 378 IPR036638 GO:0046983
Dod01g1555 492 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 310 359 IPR011598 GO:0046983
Dod01g1555 492 SMART finulus 316 365 IPR011598 GO:0046983
Dod01g1555 492 MobiDBLite consensus disorder prediction 252 323 - -
Dod01g1555 492 CDD bHLH_AtPIF_like 310 371 - -
Dod01g1555 492 MobiDBLite consensus disorder prediction 1 31 - -
Dod01g1555 492 MobiDBLite consensus disorder prediction 271 304 - -
Dod01g1555 492 MobiDBLite consensus disorder prediction 218 238 - -
Dod01g1555 492 PANTHER TRANSCRIPTION FACTOR UNE10 1 491 - -
Dod01g1555 492 Pfam Helix-loop-helix DNA-binding domain 315 360 IPR011598 GO:0046983
Dod01g1555 492 Gene3D - 305 370 IPR036638 GO:0046983
Dod01g1555 492 Coils Coil 316 336 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g1555 Dod-Chr1 42827600 42834356 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g1555 1 473 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00050 48.441 2.01e-102 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dod01g1555 HLH 7.7e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g1555 - - ahf:112697399 620.542